BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0155500 Os10g0155500|AK121800
(362 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17940.1 | chr3:6143707-6145244 REVERSE LENGTH=342 506 e-144
AT3G47800.1 | chr3:17634971-17636998 FORWARD LENGTH=359 343 6e-95
AT5G15140.1 | chr5:4908686-4910670 FORWARD LENGTH=491 328 2e-90
AT3G01260.1 | chr3:80244-82005 REVERSE LENGTH=427 209 1e-54
>AT3G17940.1 | chr3:6143707-6145244 REVERSE LENGTH=342
Length = 341
Score = 506 bits (1304), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/341 (71%), Positives = 281/341 (82%), Gaps = 3/341 (0%)
Query: 25 LAVAAMAAEEILELSNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMKGIS 84
+A + EI EL+NG + KI+ +G TITSL VPD +G L DVVLGFD+++PY+KG++
Sbjct: 1 MADQSKNTPEIFELNNGTMQVKISNYGTTITSLSVPDKNGKLGDVVLGFDSVDPYVKGLA 60
Query: 85 PYFGCIVGRVANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVV--ERKSEC 142
PYFGCIVGRVANRIKEGKF+LNGV Y+L IN PNSLHGG KGFDK +W+V +R E
Sbjct: 61 PYFGCIVGRVANRIKEGKFSLNGVNYTLPINKPPNSLHGGNKGFDKKIWEVAGHKRDGEK 120
Query: 143 PSITFQYHSKDGEEGYPGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLA 202
P ITF+YHS DGEEGYPG V+V ATY+L +TT+RLDMEAV ENK TPINLAQHTYWNLA
Sbjct: 121 PFITFKYHSADGEEGYPGAVSVTATYTLTSATTMRLDMEAVPENKDTPINLAQHTYWNLA 180
Query: 203 GHNSGDTLDHSIQIWGKHITPVDENTIPTGEIMPVKGTPFDFTTEHKIGARINDVPGGYD 262
GH+SG+ LDH IQIWG HITPVDE T+PTGEI+PVKGTPFDFT E +IG I +V GYD
Sbjct: 181 GHDSGNILDHKIQIWGSHITPVDEYTVPTGEILPVKGTPFDFTEEKRIGESIGEVGIGYD 240
Query: 263 HNYVLDS-GEEKNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGKGGAVYGK 321
HNYVLD +EK GLKHAAKL D+++SR L+LWT+ PGMQFYT NYV+GV GKG AVYGK
Sbjct: 241 HNYVLDCPDQEKEGLKHAAKLSDAASSRVLNLWTNVPGMQFYTGNYVNGVVGKGNAVYGK 300
Query: 322 HSGVCLETQGFPNAINQPNFPSVVVQPGEKYKHTMLFEFSA 362
H+GVCLETQGFPNAINQ NFPSVVV+ GEKY HTMLFEFSA
Sbjct: 301 HAGVCLETQGFPNAINQSNFPSVVVKAGEKYNHTMLFEFSA 341
>AT3G47800.1 | chr3:17634971-17636998 FORWARD LENGTH=359
Length = 358
Score = 343 bits (881), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/326 (52%), Positives = 219/326 (67%), Gaps = 3/326 (0%)
Query: 37 ELSNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMKGISPYFGCIVGRVAN 96
+L+ G ++ +GA +TSL++PD HG DVVLGFDT++ Y K + YFG IVGRVAN
Sbjct: 35 KLTRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLGFDTVDGY-KNDTTYFGAIVGRVAN 93
Query: 97 RIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKDGEE 156
RI KF LNG Y N G N+LHGG KGF V+W V ++ ITF Y S DGEE
Sbjct: 94 RIGGAKFKLNGHLYKTDPNEGRNTLHGGSKGFSDVIWSV-QKYVPTSHITFTYDSFDGEE 152
Query: 157 GYPGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSGDTLDHSIQI 216
G+PG+VTV+ TY L L + MEA NK TPINLA HTYWNL HNSG+ L H IQ+
Sbjct: 153 GFPGNVTVKVTYMLIGENKLGVKMEAKPLNKPTPINLALHTYWNLHSHNSGNILSHKIQL 212
Query: 217 WGKHITPVDENTIPTGEIMPVKGTPFDFTTEHKIGARINDVPGGYDHNYVLDSGEEKNGL 276
ITPVD+ IPTGEI + GTP+DF +IG+RI+++PGGYD NYV+D K+ L
Sbjct: 213 LAGKITPVDDKLIPTGEITSITGTPYDFLEPREIGSRIHELPGGYDINYVIDGPIGKH-L 271
Query: 277 KHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGKGGAVYGKHSGVCLETQGFPNAI 336
+ A + + R ++LWT+ PG+QFYT+N + V GKG AVY K+ G+CLETQGFP+++
Sbjct: 272 RKTAVVTEQVTGRKMELWTNQPGVQFYTSNMMKRVVGKGKAVYEKYGGLCLETQGFPDSV 331
Query: 337 NQPNFPSVVVQPGEKYKHTMLFEFSA 362
N NFPS +V PGE Y H MLF F+A
Sbjct: 332 NHKNFPSQIVNPGESYLHVMLFRFTA 357
>AT5G15140.1 | chr5:4908686-4910670 FORWARD LENGTH=491
Length = 490
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/329 (49%), Positives = 214/329 (65%), Gaps = 5/329 (1%)
Query: 35 ILELSNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMKGISPYFGCIVGRV 94
+ EL G +T K WGA+I SL PD +G + D+VLG+D+++ Y K YFG VGRV
Sbjct: 162 LYELKKGNLTVKFTNWGASIISLHFPDKNGKMDDIVLGYDSVKTY-KTDKVYFGATVGRV 220
Query: 95 ANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERK--SECPSITFQYHSK 152
ANRI +GKF LNG EY ++N+G N+LHGG KGF VVW V + + + P I F + S
Sbjct: 221 ANRIGKGKFKLNGKEYKTSVNDGKNTLHGGKKGFGDVVWAVAKHQYDGKKPHIVFTHTSP 280
Query: 153 DGEEGYPGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSGDTLDH 212
DG++G+PG+++V TY L L + MEA ++KATP+NLA H+YWNL GHNSGD L
Sbjct: 281 DGDQGFPGELSVTVTYKLVKDNELSVVMEAKPKDKATPVNLAHHSYWNLGGHNSGDILSE 340
Query: 213 SIQIWGKHITPVDENTIPTGEIMPVKGTPFDFTTEHKIGARINDVPGGYDHNYVLDSGEE 272
IQI G TPVD IPTG+I PVKGT +DF I + D+ GYD NY LD +
Sbjct: 341 EIQILGSGYTPVDGELIPTGKINPVKGTAYDFLQLRPIKDNMKDLKTGYDINYCLDGKAK 400
Query: 273 KNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGKGGAVYGKHSGVCLETQGF 332
K ++ +L D + R ++L + G+QFYT + V GK GAVY G+CLETQ +
Sbjct: 401 K--MRKIVELVDKKSGRKMELSGNQAGLQFYTGGMLKDVKGKNGAVYQAFGGLCLETQSY 458
Query: 333 PNAINQPNFPSVVVQPGEKYKHTMLFEFS 361
P+A+N P FPS +V+PG+KYKHTMLF+FS
Sbjct: 459 PDALNHPKFPSQIVEPGKKYKHTMLFKFS 487
>AT3G01260.1 | chr3:80244-82005 REVERSE LENGTH=427
Length = 426
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 182/331 (54%), Gaps = 30/331 (9%)
Query: 34 EILELSNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMKGISPYFGCIVGR 93
+ EL G +T K GA+I SL+ P+ +G L D+VLG+D++ +M + + G + R
Sbjct: 120 RVHELKKGNLTVKFTNRGASIMSLLFPNINGKLEDIVLGYDSVNDHMID-TVFCGVTLAR 178
Query: 94 VANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERK--SECPSITFQYH- 150
VA++ ++ A N+G N++HGG K V+W V + K + P I F Y
Sbjct: 179 VASKKEKA-----------AANDGKNTIHGGTKESSDVIWRVKKHKHNGKKPYIVFTYTT 227
Query: 151 SKDGEEGYPGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSGDTL 210
S DG++G + V TY L L++ M+A A+ K TP+NL +YWNL GHN+ D
Sbjct: 228 SPDGDQG---KLEVTVTYKLVGENRLKMVMQAKAKEKTTPLNLVHRSYWNLGGHNNEDIF 284
Query: 211 DHSIQIWGKHITPVDENTIPTGEIMPVKGTPFDFTTEHKIGARINDVPGGYDHNYVLDSG 270
IQI G T +D+N PTG+I+ VKGTPFDF I IN++ GY NY LD
Sbjct: 285 SEEIQILGSGYTHLDDNLTPTGKILAVKGTPFDFRQLRPIKDNINELKTGYGINYCLDG- 343
Query: 271 EEKNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGKGGAVYGKHSGVCLETQ 330
N ++ +L D+ + ++L TD G++ T K G+V+ +SG+CLE+
Sbjct: 344 -VANKMRKVVELVDNKSKIKMELSTDQSGLRLKTTK------PKNGSVHKAYSGLCLESH 396
Query: 331 GFPNAINQPNFPSVVVQPGEKYKHTMLFEFS 361
AIN S +++PGE YKHTMLF+FS
Sbjct: 397 ----AINYQYRSSQIIEPGETYKHTMLFKFS 423
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,455,331
Number of extensions: 379373
Number of successful extensions: 576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 4
Length of query: 362
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,364,969
Effective search space: 2191621878
Effective search space used: 2191621878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)