BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0149200 Os10g0149200|J075140D17
         (224 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38770.1  | chr4:18097009-18098448 REVERSE LENGTH=449           62   2e-10
AT2G21140.1  | chr2:9060868-9062035 REVERSE LENGTH=322             50   1e-06

>AT4G38770.1 | chr4:18097009-18098448 REVERSE LENGTH=449
          Length = 448

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 17/134 (12%)

Query: 47  NMKAQDAFKGLQVAIKCKNSDGVYESKAIGDLDGDGAFSVPLAADDL--HGA--ADCFAQ 102
            +K   AF GL+V I CK + G + +K  G++D  G F + +  D +  +GA   +C+AQ
Sbjct: 41  KIKTPHAFSGLRVTIDCKVNKGHFVTKGSGNIDDKGKFGLNIPHDIVSDNGALKEECYAQ 100

Query: 103 LHSAASSTPCP---GQEPSKIVPLSSTTDNGVDKANTFVAVAGKRMYSSTSPAECTSAFL 159
           LHSAA  TPCP   G E +KIV LS + D           + G +     SP  C S F 
Sbjct: 101 LHSAA-GTPCPAHDGLESTKIVFLSKSGDK---------HILGLKQNLKFSPEICVSKFF 150

Query: 160 YDYFHKHPFFDYFH 173
           +      PF  + H
Sbjct: 151 WPMPKLPPFKGFDH 164



>AT2G21140.1 | chr2:9060868-9062035 REVERSE LENGTH=322
          Length = 321

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 19/123 (15%)

Query: 47  NMKAQDAFKGLQVAIKCKNSD--GVYESKAIGDLDGDGAF--SVP--LAADDLHGAADCF 100
            +K  +AF GL+V I+CK +D  G + ++  G++D  G F  ++P  +  DD      C+
Sbjct: 47  KIKIPNAFSGLRVTIECKAADSKGHFVTRGSGEVDETGKFHLNIPHDIVGDDGTLKEACY 106

Query: 101 AQLHSAASSTPCP---GQEPSKIVPLSSTTDNGVDKANTFVAVAGKRMYSSTSPAECTSA 157
           A L SA  + PCP   G E SKIV LS +  N          V G +     SP  C S 
Sbjct: 107 AHLQSAFGN-PCPAHDGLEASKIVFLSKSGQN---------HVLGLKKSLKFSPEVCISK 156

Query: 158 FLY 160
           F +
Sbjct: 157 FFW 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,183,594
Number of extensions: 124574
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)