BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0148000 Os10g0148000|J080001G14
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30880.1  | chr4:15035229-15035750 FORWARD LENGTH=110           59   7e-10
AT4G33550.1  | chr4:16134538-16134930 FORWARD LENGTH=131           56   5e-09

>AT4G30880.1 | chr4:15035229-15035750 FORWARD LENGTH=110
          Length = 109

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 31 CQNDVEVLKTTCYKFVEKDGPKLQPSPDCCTSMKGVNVPCVCTYLGSPGVRDNINMDKVF 90
          CQ D+E L   C  +V++ GPK+ PS  CC  +K  ++PC C  + +  V+  I+MDKV 
Sbjct: 29 CQGDIEGLMKECAVYVQRPGPKVNPSEACCRVVKRSDIPCACGRI-TASVQQMIDMDKVV 87

Query: 91 YVTKQCG 97
          +VT  CG
Sbjct: 88 HVTAFCG 94



>AT4G33550.1 | chr4:16134538-16134930 FORWARD LENGTH=131
          Length = 130

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 31  CQNDVEVLKTTCYKFVEKDGPKLQP-SPDCCTSMKGVNVPCVCTYLGSPGVRDNINMDKV 89
           C  ++  L   C ++V   GP  QP S  CC  ++ ++VPC C Y+ S  V + I+MDKV
Sbjct: 32  CGANLSGLMNECQRYVSNAGPNSQPPSRSCCALIRPIDVPCACRYV-SRDVTNYIDMDKV 90

Query: 90  FYVTKQCGIAIPG--NCGGEQAS 110
            YV + CG  IP    CG +  S
Sbjct: 91  VYVARSCGKKIPSGYKCGSKYLS 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,226,306
Number of extensions: 83501
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)