BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0134500 Os10g0134500|Os10g0134500
         (450 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            57   1e-08

>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 154/373 (41%), Gaps = 65/373 (17%)

Query: 48  VVEEADGRYITNSGMLMQLKGLADAMYRGHHVLDMFRCRNKIQENSIKEVSSPFPPLKRF 107
           V+ +AD R      +   L G+ DA ++   +LD  +    ++   + E        +  
Sbjct: 49  VLADADQRAEHVREVKHWLTGIKDAFFQAEDILDELQTE-ALRRRVVAEAGGLGGLFQNL 107

Query: 108 RAIVDAAGNNKARYLELHKTLRILEAAVDH-----MAEFVVILGGCDRMSRR--PYDAYL 160
            A  +A    K    ++ K +R+LE  V H     + E+        R + R  P D   
Sbjct: 108 MAGREAI--QKKIEPKMEKVVRLLEHHVKHIEVIGLKEYSETREPQWRQASRSRPDD--- 162

Query: 161 YTDNFMFGRHTEKQRLLNFLLEYN--SQGLPPVLPIIGSLAVGKKTLVAHVCADERVQSQ 218
                + GR  +K  L+N LL  +  S G P V+ ++G   VGK TL   V  D RV   
Sbjct: 163 LPQGRLVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEH 222

Query: 219 FS------------------SILH------LNEDDLLRLA-HSDTLLSGK--MLVVVEFV 251
           F                   ++L       +N +DL  L       LSGK  +LV+ +F 
Sbjct: 223 FEVKMWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFW 282

Query: 252 SDLNEKNWEEFYTSLTQMNQGSKVITISR------FRKSEKLGTVKPIALDIHSYEELS- 304
           S+ ++  WE F  + T   +GSK++  +R        K+EK+  +K +  +   +E +S 
Sbjct: 283 SE-SDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMK-LMTNEECWELISR 340

Query: 305 YLFKTLAFGSVNPKDHPRLLQIAEEFAMQLQLKSSLVAANFLADVLRRNLDVNFWLCMLN 364
           + F  ++ GS+N +      +IAE      Q K   +AA  +A  LR   + + W  +  
Sbjct: 341 FAFGNISVGSINQELEGIGKRIAE------QCKGLPLAARAIASHLRSKPNPDDWYAV-- 392

Query: 365 RCITVAEKNFSLY 377
                  KNFS Y
Sbjct: 393 ------SKNFSSY 399



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,084,259
Number of extensions: 367178
Number of successful extensions: 928
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)