BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0132300 Os10g0132300|AK111282
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19715.3 | chr1:6816934-6819432 REVERSE LENGTH=602 54 3e-08
AT1G05760.1 | chr1:1723797-1724440 REVERSE LENGTH=175 53 5e-08
AT3G21380.1 | chr3:7528478-7530457 FORWARD LENGTH=461 50 4e-07
AT3G16460.1 | chr3:5593029-5595522 FORWARD LENGTH=706 46 9e-06
>AT1G19715.3 | chr1:6816934-6819432 REVERSE LENGTH=602
Length = 601
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 7 IGPWGMGRGSQLTENCDIAVAPLRLESITVKHGEVVDCLSFSYRDREKLPHTAGPWGGRG 66
+GPWG G + V + I + HG +D + Y + G G
Sbjct: 16 LGPWGGQSGHAWDDGMYTTV-----KQIIIAHGSGIDSIQIEYDKNGSSVWSEKRGGKGG 70
Query: 67 GQEITINLG-PSEFVTEVHGEYGSY--YGHNSIANLTFVTNRGRHGPFGIVDTSGWDRFS 123
+ + P E++ V+G YGS+ +G + +LTF +NR ++GPFG VD+ + F+
Sbjct: 71 KKFDKVKFDYPHEYLISVNGTYGSFDVWGTICVRSLTFESNRRKYGPFG-VDSGTF--FA 127
Query: 124 VPIKNNSSIVGFFARTGDSYLSAIGVYVRP 153
+P K+ S I+GF + G YL AIGV+ +P
Sbjct: 128 LP-KSGSKIIGFHGKAG-WYLDAIGVHTQP 155
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 8 GPWGMGRGSQLTENCDIAVAPLRLESITVKHGEVVDCLSFSYRDREKLPHTAGPWGGRGG 67
GPWG G G + + D +R +++ G V + + +R + G GG
Sbjct: 244 GPWG-GTGGIMFD--DGIYTGIRQINLSRNVGIVSMKVCYDFRGQAVWGSKHGGVGGFKH 300
Query: 68 QEITINLGPSEFVTEVHGEYGS--YYGHNSIANLTFVTNRGRHGPFGIVDTSGWDRFSVP 125
+I + PSE +T V G YG Y G N I +LTF TNRG+HGP+G +
Sbjct: 301 DKIVFDY-PSEVLTHVTGTYGPLMYMGPNVIKSLTFRTNRGKHGPYGEEQGPSFTH---- 355
Query: 126 IKNNSSIVGFFARTGDSYLSAIGVYV 151
+ +VGF R G +L +IGV+V
Sbjct: 356 QMDEGKVVGFLGREG-LFLDSIGVHV 380
>AT1G05760.1 | chr1:1723797-1724440 REVERSE LENGTH=175
Length = 174
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 5 VKIGPWGMGRGSQLT-ENCDIAVAPLRLESITVKHGEVVDCLSFSYR----DREKLPHTA 59
+KIGP G T N D + I + HG V +S ++ + L
Sbjct: 1 MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHG-VAGIMSIQFQFVMDGKLVLSDRH 59
Query: 60 GPWGGRGGQEITINLGPSEFVTEVHGEYGSYYGHN-SIANLTFVTNRGRHGPFGIVDTSG 118
GP+ G I +N P E++T + GEY Y +N + +L F TN +GPFG +S
Sbjct: 60 GPFSGNMFDVIELNY-PHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSN 118
Query: 119 WDRFSVPIKNNSSIVGFFARTGDSYLSAIGVYVRP 153
D+F+ + + GF S L IGVY+RP
Sbjct: 119 -DKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP 152
>AT3G21380.1 | chr3:7528478-7530457 FORWARD LENGTH=461
Length = 460
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 29 LRLESITVKHGEVVDCLSFSYRDREKLPHTAGPWGGRGGQEITINLGPSEFVTEVHGEYG 88
++++ + + + +V++ + Y PH G G + ++L P E++T+V G Y
Sbjct: 14 MKVKRVQITYEDVINSIEAEYDGDTHNPHHHGTPGKKSD---GVSLSPDEYITDVTGYYK 70
Query: 89 SYYGHNSIANLTFVTNRGRHGPFGIVDTSGWDRFSVPIKNNSSIVGF 135
+ ++IA L F TN+ +GP+G ++FS+ ++ I GF
Sbjct: 71 TTGAEDAIAALAFKTNKTEYGPYG---NKTRNQFSIHAPKDNQIAGF 114
>AT3G16460.1 | chr3:5593029-5595522 FORWARD LENGTH=706
Length = 705
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 76 PSEFVTEVHGEYGSYYGHNSIAN-LTFVTNRGRHGPFGIVDTSGWDRFSVPIKNNSSIVG 134
PSE++T V G Y + +G+ I N L F TN+ PFGI + ++ K+ IVG
Sbjct: 629 PSEYITAVDGTYDAIFGNEPIVNMLRFTTNKRVSIPFGIGAGTAFEF----KKDGQKIVG 684
Query: 135 FFARTGDSYLSAIGVYVRP 153
F R GD L GV+V P
Sbjct: 685 FHGRAGD-LLHKFGVHVAP 702
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,573,839
Number of extensions: 151447
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)