BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0108100 Os10g0108100|Os10g0108100
(698 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | chr4:11045912-11047716 FORWARD LENGTH=377 62 1e-09
AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627 57 2e-08
ATMG00310.1 | chrM:90883-91347 REVERSE LENGTH=155 50 3e-06
>AT4G20520.1 | chr4:11045912-11047716 FORWARD LENGTH=377
Length = 376
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 282 IANRLSKVAQKTISESQTAFIPGRQILDGVVILHEVLHEVKIKK--QSGIIVKFGFEKAY 339
+ RL + I +Q +FIPGR D +V + E +H ++ KK + +++K EKAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 340 DKVQWQFLFDVLERKGFDEKVIGWIKHATLNGKVAININGNTEEFFRTYK-----GVRQG 394
D+++W +L D L GF E + I +T + G + R G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 395 DPLSPLLFNYVANA 408
D +P N VA A
Sbjct: 121 DMAAPFTSNSVACA 134
>AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627
Length = 626
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 156 EIYWQGRSGEKWMLEGDANAAFFHGVANGRKRKTTIRSLEGEEGP-IENADELKEHIYGF 214
E +++ +S KW+ +GDAN FFH V + K I+ L ++ +EN ++KE I +
Sbjct: 432 ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491
Query: 215 YKKLFGMELPPKFCLSHNMWEGRGRLSSEDNI--ELTKPFSMEEIEGALREMKTNTAPGP 272
Y L G + S + D + L+ S +EI A+ M N APGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551
Query: 273 DGFS 276
D F+
Sbjct: 552 DSFT 555
>ATMG00310.1 | chrM:90883-91347 REVERSE LENGTH=155
Length = 154
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 478 EMNSIRSRFFWEGLEMKRKYHMVRWEALCRPK-DFGGLGFSNTRVMNIALLSKWIIKLES 536
++ S + F+W E KRK V W+ LC+ K D GGLGF + N ALL+K ++
Sbjct: 20 KLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIH 79
Query: 537 GCNDACCKLLRNKYMQEGGFFQ-SNARGASQFWKGLYEIKKWLSLGSAYELGNA 589
+ +LLR++Y + S S W+ + ++ LS G +G+
Sbjct: 80 QPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDG 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,577,953
Number of extensions: 663024
Number of successful extensions: 1429
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1426
Number of HSP's successfully gapped: 3
Length of query: 698
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 593
Effective length of database: 8,227,889
Effective search space: 4879138177
Effective search space used: 4879138177
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)