BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0104700 Os10g0104700|AK072615
(826 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 144 2e-34
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 116 4e-26
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 113 5e-25
AT1G70640.1 | chr1:26636255-26636887 FORWARD LENGTH=175 50 5e-06
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 220/502 (43%), Gaps = 42/502 (8%)
Query: 289 KNETTRVTVKCVGEGCTWRLHASESSRNKKFVIKKMTDEHTCGGGSGEGQRRATRQWLTT 348
+ E T +CV C W L A+ + I K T HTC S E ++
Sbjct: 216 ETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYTGPHTC---SHEYPNDFESEFAAD 272
Query: 349 VIKEKLHENPLFKPKDLVKEIYEEYGVMLTYSQVWRGREVAQKELYHAIRETYSHLPWYC 408
I+ + P +L K E+ G L S++ G+ K ++ +++ +P
Sbjct: 273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMP--- 329
Query: 409 ERLLETNPGSIALLS-------PMVD-TKFRRFFVAFHASLHGFTNGCRPLIFLDKVPLK 460
+L+ S LL P D FR F +F S+ GF + CRPLI +D L
Sbjct: 330 -KLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQH-CRPLIVVDTKSLN 387
Query: 461 ATNEYKLLVAAGVDADDGVFPVAFNVVEDENYESWVWFLMQLRYALQNHNYPYNAMTFLS 520
+ KL++A+GVDA + FP+AF V ++ + +SW WF ++R + + +S
Sbjct: 388 GKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQR----KDLCLIS 443
Query: 521 SGQKGLDAAVPQ---VFEE--SHHAFCLHHIMEEFKGELRKGPWSQQIRDGMVEDFTRAA 575
S + + A V + +++E +HH FCL+H+ +F G R + +VE +A
Sbjct: 444 SPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFR-----DYNLESLVE---QAG 495
Query: 576 QACSIEDFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCRYDHFSSNIVDAFN---- 631
E+F++ + I+ + EA W+ W+ A G RY + F
Sbjct: 496 STNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGIIEIDREALFAVCRG 555
Query: 632 -NWIPTKKEGSIVLMIDSLRMKIMEVIEARRESCKSWSGPLTPSMEFKVQDEMSKAGKLT 690
+ G ++LM D LR + + + S P M+ K+++ M+ +
Sbjct: 556 FPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFMD-KLEEFMTDSIPYV 614
Query: 691 VLCSSETVFEVRGSA---IYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGRSFYDYCS 747
+ F+V S+ ++V L CTCR++Q PC+HA+AVF ++ + Y
Sbjct: 615 ITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVD 674
Query: 748 KFFRIESYHLAYSGAIFPIPDM 769
+ + +E Y Y+ P+PD+
Sbjct: 675 ECYTVEQYCKTYAATFSPVPDV 696
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 207/502 (41%), Gaps = 58/502 (11%)
Query: 298 KCVGEGCTWRLHASESSRNKKFVIKKMTDEHTCGGGSGEGQRRATRQWLTTVIKEKLHEN 357
+C+ C W L A+ ++ I K T HTC E + ++ T I+ +
Sbjct: 232 ECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKS---EFETDEIERAVRYM 288
Query: 358 PLFKPKDLVKEIYEEYGVMLTYSQVWRGREVAQKELYHAIRETYSHLPWYCERLLETNPG 417
P +L K ++ G L S V +E A K ++ +++ P +L+
Sbjct: 289 PTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFP----KLMSALCS 344
Query: 418 SIALLSPMVDTKFRRF-----------FVAFHASLHGFTNGCRPLIFLDKVPLKATNEYK 466
S LL VD K+ F F AF S+ GF + CRPLI +D L + K
Sbjct: 345 SNGLL---VDWKYDLFPNPNFASFCGVFWAFPQSIEGFQH-CRPLIVVDTKNLNCEYQLK 400
Query: 467 LLVAAGVDADDGVFPVAFNVVEDENYESWVWFLMQLRYALQNHNYPYNAMTFLSSGQKGL 526
L++A+GVDA + FP+AF V ++ + + W WFL +R + + +SS +
Sbjct: 401 LMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQR----KGLCLISSPHPDI 456
Query: 527 DAAVPQVFEE-----SHHAFCLHHIMEEFKGELRKGPWSQQIRDGMVEDFTRAAQACSIE 581
A V + + ++H F L+H +F +IR RA +
Sbjct: 457 IAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIR--------RAGSTSQKD 508
Query: 582 DFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCRYDHFSSN------IVDAFNNWIP 635
+F + + I+ + EA W+ W+ A G RY N + +AF
Sbjct: 509 EFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEINTKALFAVCNAFEQ-AG 567
Query: 636 TKKEGSIVLMIDSLRMKIMEVIEARRESCKS---WSGPLTPSMEFKVQDEMSKAGKLTVL 692
GS++L+ D LR K + R S ++ P+ +E ++ + +T L
Sbjct: 568 HVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPL 627
Query: 693 CSSETVFEV-----RGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGRSFYDYCS 747
F+V +G I V L++ CTC +Q PC+HA+AV ++ + Y
Sbjct: 628 --DNNAFQVATALDKGECI--VQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVD 683
Query: 748 KFFRIESYHLAYSGAIFPIPDM 769
+ +E Y+ +P+M
Sbjct: 684 DCYTLERLKRTYATIFSHVPEM 705
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 46/369 (12%)
Query: 430 FRRFFVAFHASLHGFTNGCRPLIFLDKVPLKATNEYKLLVAAGVDADDGVFPVAFNVVED 489
FR F AF S+ GF + CRPLI +D L + KL++A+ DA + FP+AF V ++
Sbjct: 361 FRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKE 419
Query: 490 ENYESWVWFLMQLRYALQNHNYPYNAMTFLSSGQKGLDAAVPQVFEE-----SHHAFCLH 544
+ +SW WFL ++R + + +SS + A + + + ++H FCL+
Sbjct: 420 VSVDSWRWFLTRIREKVTQR----QGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLY 475
Query: 545 HIMEEFKGELRKGPWSQQIRDGMVEDFTRAAQACSIEDFNASIESIRNISTEAADWIIAS 604
H+ + P +V++ ++Q E+F++ ++ I+ + EA W+
Sbjct: 476 HLCSKL---CSVSPGFDYNMHFLVDEAGSSSQK---EEFDSYMKEIKERNPEAWKWLDQF 529
Query: 605 KPEHWSDAIFRGCRYDHFSSNIVDAF---NNWIPTKKEGSIVLMIDSLR----------- 650
P W+ A G RY + F + G ++L+ L+
Sbjct: 530 PPHQWALAHDDGRRYGIMRIDTEALFAVCKRFRKVAMAGGVMLLFGQLKDAFAESFKLSR 589
Query: 651 ----------MKIMEVIEARRESCKSWSGPLTPSMEFKVQDEMSKAGKLTVLCSSETVFE 700
+ME +E +W +TP Q M+ K ++ S
Sbjct: 590 GSLKHGDVYTEHVMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQS----- 644
Query: 701 VRGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGRSFYDYCSKFFRIESYHLAYS 760
S +V L + CTC +Q + PC+HA+AV + + + Y + +E YH YS
Sbjct: 645 -NDSTSGIVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYS 703
Query: 761 GAIFPIPDM 769
P+P++
Sbjct: 704 AKFSPVPEL 712
>AT1G70640.1 | chr1:26636255-26636887 FORWARD LENGTH=175
Length = 174
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 18 ICQYGGEFTSG-PNGNLIYKGGEAHAVDVTREMSLDNFKDEVSKVFHVEVSDVSLKYFLP 76
+C YGG T P+G L Y+GG+ + VTR +S K ++ ++ + V+ SL+ LP
Sbjct: 11 LCSYGGRITPRYPDGKLRYQGGDTRVLSVTRAISFTELKKKLGEICGIAVT--SLRCQLP 68
Query: 77 NNN-RTLITISCDRDLQRMVDF--TASSAQVDVFL 108
++ L+T+ D DL+ +++ A +AQV + +
Sbjct: 69 TDDLDALVTVRSDEDLKNLMEEYDLAITAQVKIHV 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,429,879
Number of extensions: 801609
Number of successful extensions: 2090
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 5
Length of query: 826
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 719
Effective length of database: 8,173,057
Effective search space: 5876427983
Effective search space used: 5876427983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)