BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0103700 Os10g0103700|AK060176
(74 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37790.1 | chr4:17768241-17769272 FORWARD LENGTH=279 68 1e-12
AT3G60390.1 | chr3:22320788-22322370 REVERSE LENGTH=316 68 1e-12
AT5G06710.1 | chr5:2068305-2070284 REVERSE LENGTH=337 67 1e-12
AT4G16780.1 | chr4:9449291-9450604 FORWARD LENGTH=285 67 2e-12
AT2G44910.1 | chr2:18517887-18519525 REVERSE LENGTH=319 67 2e-12
AT4G17460.1 | chr4:9739862-9740983 FORWARD LENGTH=283 62 6e-11
AT2G22800.1 | chr2:9704949-9706048 REVERSE LENGTH=275 62 8e-11
AT5G47370.1 | chr5:19216482-19217647 REVERSE LENGTH=284 61 1e-10
AT2G01430.1 | chr2:187798-190369 REVERSE LENGTH=276 56 4e-09
AT1G70920.1 | chr1:26736126-26738419 FORWARD LENGTH=207 47 2e-06
>AT4G37790.1 | chr4:17768241-17769272 FORWARD LENGTH=279
Length = 278
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 36/40 (90%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ RTKLKQTEVDCE LK+CCETLT+ENRRL +ELQ L+AL
Sbjct: 175 RARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKAL 214
>AT3G60390.1 | chr3:22320788-22322370 REVERSE LENGTH=316
Length = 315
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 11/58 (18%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSAAADRTNKPTAPHLF 65
+ RTKLKQTEVDCE LKRCCE LT+ENRRL +E+ +LRAL S PHL+
Sbjct: 211 RARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLS-----------PHLY 257
>AT5G06710.1 | chr5:2068305-2070284 REVERSE LENGTH=337
Length = 336
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHS 50
+ RTKLKQTEVDCE LKRCCE+LTEENRRL +E+++LR L S
Sbjct: 239 RARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTS 281
>AT4G16780.1 | chr4:9449291-9450604 FORWARD LENGTH=285
Length = 284
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 35/40 (87%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ RTKLKQTEVDCE L+RCCE LTEENRRL +E+ +LRAL
Sbjct: 178 RARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRAL 217
>AT2G44910.1 | chr2:18517887-18519525 REVERSE LENGTH=319
Length = 318
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 11/58 (18%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSAAADRTNKPTAPHLF 65
+ RTKLKQTEVDCE LKRCC+ LTEENRRL +E+ +LRAL S PHL+
Sbjct: 212 RARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLS-----------PHLY 258
>AT4G17460.1 | chr4:9739862-9740983 FORWARD LENGTH=283
Length = 282
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ RTKLKQTEVDCE LKRC E LTEENRRL +E +LRAL
Sbjct: 184 RARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRAL 223
>AT2G22800.1 | chr2:9704949-9706048 REVERSE LENGTH=275
Length = 274
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ RTKLKQTEVDCE LK+CCETL +EN RL +E+Q+L+ L
Sbjct: 162 RARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTL 201
>AT5G47370.1 | chr5:19216482-19217647 REVERSE LENGTH=284
Length = 283
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ RTKLKQTEVDCE LKRC E LTEENRRL +E +LR L
Sbjct: 179 RARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTL 218
>AT2G01430.1 | chr2:187798-190369 REVERSE LENGTH=276
Length = 275
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRAL 47
+ R+KLKQTE++CE LKR +LTEEN RLHRE+++LRA+
Sbjct: 188 RARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAM 227
>AT1G70920.1 | chr1:26736126-26738419 FORWARD LENGTH=207
Length = 206
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSAAA 53
+ R+KLK TE++CE LKR +L E+NRRL E+++LRAL S+ +
Sbjct: 118 RARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTS 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.127 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,422,202
Number of extensions: 42188
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 10
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)