BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0102400 Os10g0102400|AK066584
(314 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10150.1 | chr1:3326160-3327404 FORWARD LENGTH=415 175 3e-44
AT3G49790.1 | chr3:18468296-18469396 REVERSE LENGTH=367 171 3e-43
AT1G59510.1 | chr1:21859768-21860913 FORWARD LENGTH=382 167 5e-42
>AT1G10150.1 | chr1:3326160-3327404 FORWARD LENGTH=415
Length = 414
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 160/335 (47%), Gaps = 34/335 (10%)
Query: 6 ADAVSQVGSDLADFLRSDSDHVPRTLLQLSKXXXXXXXXXXXXXXXXXXXXXX--XXXXX 63
A+ +S V D+ DFL SDSD +P +L Q++K
Sbjct: 68 AETLSMVSRDVKDFLNSDSDEIPNSLKQIAKITTSNEFTDSLSRVSQAVTIGAFRGYKSE 127
Query: 64 XXXXXXXXXXPAQIGLTDRILDRLLSPAGTGFASAVVGSFARNLVLSYHXXXXXXXXXXX 123
+ + DR++D++ S AGTGF S VVGSFA+NLVL ++
Sbjct: 128 SSIGDSGIEKSSDSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYSGKVESGVKCE 187
Query: 124 XXXD-----W---LCSDRGKDAAADLVRVFVSTAVAAYLDRTASVPRTSHQLLAAFTDPK 175
W L D+ ++ AD + F STA+ YLD+T + T Q+ T+PK
Sbjct: 188 GSDSSETPRWVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDI-NTYDQIFEGLTNPK 246
Query: 176 HEAKLKDLLVSVCNGAVETLVRTRRQXXXXXXXXXXXXXSE---------------AQSP 220
H+ +KD+LVSVCNGA+ET+VRT E ++S
Sbjct: 247 HQDSVKDVLVSVCNGALETIVRTSHDVFTSSRSKNVIEEIEDDDFKSNGSARSKMVSESG 306
Query: 221 HGC----VMDTVSSTLAVPSNRRFVLDITGRVTAETVRSLLDFLAQRVSDGARKSIATAR 276
G + +++TLAVPSNRRF+ D+TGRVT ET RS++ F+ + G RKSI
Sbjct: 307 DGVKSNGWTEAIATTLAVPSNRRFMFDVTGRVTLETTRSIIAFIMVKTFQGFRKSINVVH 366
Query: 277 NE----GFLAIKHITSKSMAIFTICFALCMHISMG 307
E G A++++ +KS I T+C AL +HI G
Sbjct: 367 EEVTDRGRQAVEYVGAKSSVIITVCLALYLHIISG 401
>AT3G49790.1 | chr3:18468296-18469396 REVERSE LENGTH=367
Length = 366
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 144/278 (51%), Gaps = 16/278 (5%)
Query: 6 ADAVSQVGSDLADFLRSDSDHVPRTLLQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
A+ VS + DL +FLRSDSD +P +L Q+SK
Sbjct: 65 AETVSVISKDLTEFLRSDSDQIPNSLKQISKIAKSDELNSSLIRFTQAMTVGLIRGIDDG 124
Query: 66 XXXXXXXXPAQIGLTDRILDRLLSPAGTGFASAVVGSFARNLVLSYHXXXXXXXXXXXXX 125
G TDR++D+L + +G+GFASA+VGSFARNLV++ +
Sbjct: 125 SGS---------GFTDRVMDKLFTKSGSGFASAIVGSFARNLVVALYSSAGDGSNSKLL- 174
Query: 126 XDWLCSDRGKDAAADLVRVFVSTAVAAYLDRTASVPRTSHQLLAAFTDPKHEAKLKDLLV 185
D + SD G+ D V+ FVSTAV+ YLD+T+ V L A T+PKHE K+K LV
Sbjct: 175 -DAVFSDDGRRLIGDCVQRFVSTAVSVYLDKTSDV-NVFDDLFAGLTNPKHEGKVKQTLV 232
Query: 186 SVCNGAVETLVRTRRQXXXXXXXXXXXXXSE----AQSPHGCVMDTVSSTLAVPSNRRFV 241
++CN AVET VR R+ S+ + +D VSS+L+VPSNR++V
Sbjct: 233 TLCNSAVETFVRASRKPVQLNRSSSCQDSSQTLTVGSTKQATWIDRVSSSLSVPSNRKYV 292
Query: 242 LDITGRVTAETVRSLLDFLAQRVSDGARKSIATARNEG 279
+D+TGRVT ETVRSLL+ L +R + + R G
Sbjct: 293 VDLTGRVTFETVRSLLEVLIERANGKVESYVEKVRERG 330
>AT1G59510.1 | chr1:21859768-21860913 FORWARD LENGTH=382
Length = 381
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 156/320 (48%), Gaps = 17/320 (5%)
Query: 2 VLSLADAVSQVGSDLADFLRSDSDHVPRTLLQLSKXXXXXXXXXXXXXXXXXXXXXXXXX 61
V+ A+ +S V DL +FL S+S +P +L QLSK
Sbjct: 64 VIDSAETISIVSRDLKEFLESNSHEIPNSLKQLSKITKSKEFTDSLARVSEAVAIGVFRG 123
Query: 62 XXXXXXXXXXXXPAQIGLTDRILDRLLSPAGTGFASAVVGSFARNLVLSYHXXXXXXXXX 121
+ ++DR+ S G GF S VVGSFA+NLVL ++
Sbjct: 124 YNSDPNVEKESNLS-------VVDRVFSEEGAGFVSVVVGSFAKNLVLGFYSGEIEIGSD 176
Query: 122 XXXXXDW---LCSDRGKDAAADLVRVFVSTAVAAYLDRTASVPRTSHQLLAAFTDPKHEA 178
W L D+ ++ AD + F S+AV+ Y+D+T V T Q+ A T+PKH
Sbjct: 177 DSLKPRWMNLLSDDKCRELLADCIERFTSSAVSVYIDKTVGV-NTYDQIFAGLTNPKHRD 235
Query: 179 KLKDLLVSVCNGAVETLVRTRRQXXXXXXXXXXXXXSEAQSPHGCVMDTVSSTLAVPSNR 238
+D+LVSVCNGA+ET +RT ++++ + +S+TLAVPSNR
Sbjct: 236 SARDVLVSVCNGALETFMRTSHDVFTSSGEKTDSSLRKSENRENGWAEALSTTLAVPSNR 295
Query: 239 RFVLDITGRVTAETVRSLLDFLAQRVSDGARKSIATARNE----GFLAIKHITSKSMAIF 294
+F+ D+TGRVT ET+RS+L+F+ + S ++S+ E G + ++ +KS I
Sbjct: 296 KFMFDVTGRVTLETMRSILEFVILKTSQSFKRSLDVIHEEVTERGRQVVGYVGAKSSVII 355
Query: 295 TICFALCMHISMGTRFLLPP 314
T+C A+ HI RF+ P
Sbjct: 356 TVCLAVYFHIF--NRFVRGP 373
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,442,551
Number of extensions: 121340
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 4
Length of query: 314
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 216
Effective length of database: 8,419,801
Effective search space: 1818677016
Effective search space used: 1818677016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)