BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0100300 Os10g0100300|AK065110
(497 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642 395 e-110
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 113 3e-25
AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326 67 2e-11
AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511 66 3e-11
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 62 5e-10
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 61 1e-09
AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418 51 2e-06
>AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642
Length = 641
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/386 (53%), Positives = 255/386 (66%), Gaps = 31/386 (8%)
Query: 63 TPESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVD 122
+P + ++KE DLVF+AGATGKVGSR VRE +KLGFRVRAGVRSAQRA SLVQSV+++K+
Sbjct: 72 SPTNLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQ 131
Query: 123 --DDATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYM 180
D+ T P E+LEIVECDLEK+ I A+GNA++++C IGASEK+I D+TGPYRIDY+
Sbjct: 132 NTDEGTQPVEKLEIVECDLEKK--DSIQPALGNASVIICCIGASEKEISDITGPYRIDYL 189
Query: 181 ATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWGVLCWKRRAEEALIGSGLPYT 240
AT NLV AAT+AKV +FILVTSLGTN+ GFPA +LNLFWGVLCWKR+AEEALI SGL Y
Sbjct: 190 ATKNLVDAATSAKVNNFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALIESGLNYA 249
Query: 241 IVRPGGMERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAI 300
IVRPGGMERPTDA+KETHNL +A++DT GG VSNLQVAEL+AC+A N + ++ K+VE +
Sbjct: 250 IVRPGGMERPTDAYKETHNLTLALDDTLFGGQVSNLQVAELLACMAKNPQLSFSKIVEVV 309
Query: 301 AETTAPLLPTEDQLANIPSKR----XXXXXXXXXXXXXXXXKPIQQ-------------- 342
AETTAPL P E L IPSKR KP+ Q
Sbjct: 310 AETTAPLTPIEKLLEKIPSKRPYVPPPKASVATKEVKPVPTKPVTQEPTAPKEDEAPPKE 369
Query: 343 ---SQRPLSPYTAFVDLKXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXLNSSATGT 395
RPLSPY ++ DLK + S +
Sbjct: 370 KNVKPRPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDSTSNV 429
Query: 396 P-ISVDQ-PKQQQRPLSPYTRYEELK 419
P + V Q ++++RPLSPY RYE LK
Sbjct: 430 PVVEVKQVEEKKERPLSPYARYENLK 455
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 28/260 (10%)
Query: 65 ESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDD 124
E+++ + VF+AGATG+ G R V + + GF V+AGVR ++A + + DD
Sbjct: 39 EAENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFK--------DD 90
Query: 125 ATSPAERLEIVECDLEKQAQSDIVSAIG-NAAIVVCSIGASEKDILDVTGPYRIDYMATN 183
+ L+IV D+ + + IG ++ V+C+ G + D+ P+++D T
Sbjct: 91 PS-----LQIVRADV-TEGPDKLAEVIGDDSQAVICATGF--RPGFDIFTPWKVDNFGTV 142
Query: 184 NLVQAATAAKVEHFILVTSLGTN-----RIGFPAFL-LNLFWGVLCWKRRAEEALIGSGL 237
NLV A VE F+LV+S+ N +I PA+L LNLF L K +AE+ + SG+
Sbjct: 143 NLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGI 202
Query: 238 PYTIVRPGGMERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVV 297
YTIVRPGG++ T N+V+ EDT G +S VAE +A A + + KVV
Sbjct: 203 NYTIVRPGGLKNDP----PTGNVVMEPEDTLYEGSISRDLVAE-VAVEALLQEESSFKVV 257
Query: 298 EAIAETTAPLLPTEDQLANI 317
E +A AP +D A++
Sbjct: 258 EIVARAEAPKRSYKDLFASV 277
>AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326
Length = 325
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 174 PYRIDYMATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWG--VLCWKRRAEEA 231
P ++D++ N + AA AA V+ +LV S+G I P LN +L WKR+AE+
Sbjct: 177 PEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHP---LNSIGNANILVWKRKAEQY 233
Query: 232 LIGSGLPYTIVRPGGMERPTDAFKETHNLVVAVED 266
L SG+PYTI+R GG++ +E L+V +D
Sbjct: 234 LADSGIPYTIIRAGGLQDKDGGIRE---LLVGKDD 265
>AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511
Length = 510
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 122/266 (45%), Gaps = 30/266 (11%)
Query: 70 KENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDDATSPA 129
K+ +F+AGATG+ G R + ++ GF VRAGV A L + K+ +
Sbjct: 89 KDPGTIFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKI--LSNDEV 146
Query: 130 ERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGP-YRIDYMATNNLVQA 188
+RL V+ Q I AIGNA VV ++GA+E GP ++ +VQA
Sbjct: 147 KRLNAVQSPF--QDAESIAKAIGNATKVVVTVGATE------NGPDAQVSTSDALLVVQA 198
Query: 189 ATAAKVEHFILV----TSLGTNRI--GFPAFLLNLFWGV--LCWKRRAEEALIGSGLPYT 240
A A V H +V S T + G +F NLF L E+ + + + YT
Sbjct: 199 AELAGVSHVAIVYDGTISGSTYNVLDGITSFFGNLFAKSQPLTISDLIEK-VAQTDVAYT 257
Query: 241 IVRPGGMERPTDAFKETHNLVVAVEDTYVGGL--------VSNLQVAELIACIASNRRTA 292
+++ E + ++ +N+VV+ E + G V L++A L+A I +N A
Sbjct: 258 LIKTSLTEDFSP--EKAYNVVVSAEGSNSGSGSSSSEAYKVPKLKIASLVADIFANTAVA 315
Query: 293 YCKVVEAIAETTAPLLPTEDQLANIP 318
KVVE + +AP P ++ + IP
Sbjct: 316 ENKVVEVSTDPSAPSRPVDELFSVIP 341
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 132 LEIVECDLEKQAQSDIVSAIGNAAIVVCSIGAS---EKDILDVTGPYRIDYMATNNLVQA 188
L++V+ D + A+ S V+C+ G + K + P ++D+ NL+ +
Sbjct: 122 LQVVKGD-TRNAEDLDPSMFEGVTHVICTTGTTAFPSKRWNEENTPEKVDWEGVKNLI-S 179
Query: 189 ATAAKVEHFILVTSLGTNRIG-FPAFLLNLFWGVLCWKRRAEEALIGSGLPYTIVRPGGM 247
A + V+ +LV+S+G + P ++NLF GVL +K+ E+ L SGLP+TI+RPG
Sbjct: 180 ALPSSVKRVVLVSSVGVTKSNELPWSIMNLF-GVLKYKKMGEDFLRDSGLPFTIIRPG-- 236
Query: 248 ERPTDAFKETHNL--------------VVAVEDTYVGGLVSNLQVAELIACI 285
R TD +++L V+ D VG VS L VAE ACI
Sbjct: 237 -RLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLVGE-VSRLVVAE--ACI 284
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 174 PYRIDYMATNNLVQAATAAKVEHFILVTSLGTNRIGFPAFLLNLFWG-VLCWKRRAEEAL 232
P ++D++ N + AA A V+H ++V S+G P L L G +L WKR+AE+ L
Sbjct: 105 PEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP--LNKLGNGNILVWKRKAEQYL 162
Query: 233 IGSGLPYTIVRPGGMERPTDAFKETHNLVVAVED 266
SG PYTI+R GG+ +E L+V +D
Sbjct: 163 ADSGTPYTIIRAGGLLDKEGGVRE---LLVGKDD 193
>AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418
Length = 417
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 63 TPESKSTKENDL-VFIAGATGKVGSRAVREFIKLGFRV------RAGVRSAQRASSLVQS 115
+P ++ D+ V + G+TG +G V+E IK GF V ++G+R ++
Sbjct: 73 SPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSGIRGKNDKE---ET 129
Query: 116 VEQLKVDDDATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPY 175
++QL+ + S L+++E +E +G VV S AS + +
Sbjct: 130 LKQLQGANVCFSDVTELDVLEKSIEN---------LGFGVDVVVSCLASRNG--GIKDSW 178
Query: 176 RIDYMATNNLVQAATAAKVEHFILVTSLGTN---------RIGFPAFLLNLFWGVLCWKR 226
+IDY AT N + A +HF+L++++ ++ F A L++L
Sbjct: 179 KIDYEATKNSLVAGKKFGAKHFVLLSAICVQKPLLEFQRAKLKFEAELMDL--------- 229
Query: 227 RAEEALIGSGLPYTIVRPGGMERPTDAFKETHNLVVAVED 266
AE+ S Y+IV RPT FK V V+D
Sbjct: 230 -AEQQ--DSSFTYSIV------RPTAFFKSLGGQVEIVKD 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,862,482
Number of extensions: 266070
Number of successful extensions: 617
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 7
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)