BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0573100 Os09g0573100|AK121232
         (222 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35360.1  | chr2:14889311-14890799 REVERSE LENGTH=226          231   3e-61

>AT2G35360.1 | chr2:14889311-14890799 REVERSE LENGTH=226
          Length = 225

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 146/211 (69%), Gaps = 8/211 (3%)

Query: 15  VTLRAVGPSRPTTLRLPPFISVADLRRHIAHDRHLPQDRLRLVLRGRNLPCQ---DDAHV 71
           +T + +GP+RP+ +R+   I + DLR  IA     P   LR++LRG+ L  +   DD +V
Sbjct: 20  ITYKTIGPARPSQIRVASHIKIRDLRNAIAEKGKFPVSTLRMILRGKALQDEEDGDDLYV 79

Query: 72  NLRHGDSLIVAVAPKPPANHLRXXXXXXXXXXXXXLKFKIPETTTWWKRKFFIFLRDKLR 131
            L+  DS IVAV P PPA                 LKFK+P + + WKRK + FLR+KL+
Sbjct: 80  TLKDQDSFIVAVIPNPPAG-----VESFDDDDDDDLKFKLPPSASRWKRKLYYFLRNKLK 134

Query: 132 LPDILLMVLFSLGIKAWVLIAMWFLFAPIAQMYDVGPLFILGTGFLVILCNLGRRQQGDV 191
           LPDI+LM LFSL +K WV+I +WF+ APIA  +D+GP+FILGTGF +IL NLG+RQ GDV
Sbjct: 135 LPDIILMGLFSLSLKMWVIITLWFILAPIAHRWDLGPIFILGTGFSIILLNLGKRQPGDV 194

Query: 192 SAYSIFNEDFRELPGTLNAERIDRDIRAGQF 222
           SAYSIFNEDFRELPGT NA+RIDRDIRAGQ 
Sbjct: 195 SAYSIFNEDFRELPGTYNADRIDRDIRAGQM 225



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.146    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,406,840
Number of extensions: 170440
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)