BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0568900 Os09g0568900|AB029060
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27730.1  | chr2:11820056-11820867 REVERSE LENGTH=114           87   2e-18

>AT2G27730.1 | chr2:11820056-11820867 REVERSE LENGTH=114
          Length = 113

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 7/107 (6%)

Query: 19  RLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGEQASTAGAAANAVKTGSGS 78
           R FSSG KVL EEE+AAENV+IKKME EKL+KLA +G  PGEQA  AG+A+ A   G+ +
Sbjct: 12  RRFSSG-KVLSEEERAAENVFIKKMEQEKLQKLARQG--PGEQA--AGSASEAKVAGATA 66

Query: 79  TESRSAG--VSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSEDIVD 123
           + S  +G  VS DKNRNYAV+AG VA +  +GWYL +  KK  ++ +
Sbjct: 67  SASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.124    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,326,730
Number of extensions: 83991
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 105 (45.1 bits)