BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0560700 Os09g0560700|AK069278
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44720.1 | chr5:18043086-18045275 FORWARD LENGTH=309 393 e-110
AT1G30910.1 | chr1:11000912-11002801 FORWARD LENGTH=319 389 e-108
AT1G16540.1 | chr1:5659465-5665201 FORWARD LENGTH=820 116 2e-26
>AT5G44720.1 | chr5:18043086-18045275 FORWARD LENGTH=309
Length = 308
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/305 (61%), Positives = 232/305 (76%), Gaps = 3/305 (0%)
Query: 21 EPAATVRSILIYPIKSCRGISVPQAPITSTGFRWDRQWVVVNSKGRAYTQRVEPKLALVE 80
E ++S++IYPIKSCRGISVPQA +T TGF+WDR W+VVN KGRAYTQRVEP LALVE
Sbjct: 2 EEGLKIQSLVIYPIKSCRGISVPQATVTHTGFQWDRYWLVVNYKGRAYTQRVEPTLALVE 61
Query: 81 VEMPPEAFAEEWRPTADSYLVGRAPGMDPLKIPLSAEQAIINDVSVWEWSGSAYDEGAEA 140
E+P EAF E+W PT DS LV RAPGM PLKIPL+ ++ VS+WEWSGSA+DEG EA
Sbjct: 62 SELPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSSVAEGVSMWEWSGSAFDEGEEA 121
Query: 141 AEWFSSYFGNPSRLVRFKEGSEIRPTNPDYAQGYKIMFTDCFPFLMASQGSLDALNEVLK 200
A+WFS Y G SRLVRF + +E RP+ P++A GY F D FPFL+ASQGSLD LN +L
Sbjct: 122 AKWFSDYLGKQSRLVRFNKDTETRPSPPEFAAGYSTTFMDMFPFLVASQGSLDHLNTLLP 181
Query: 201 EPVPMNRFRPNILVDGCHPYSEDLWKTIKINKLTFQGVKLCNRCKVPTINQENGILG-TE 259
EPVP+NRFRPNILVD C P+ EDLW IKIN L FQGV+LC+RCKVPT+NQE G++G E
Sbjct: 182 EPVPINRFRPNILVDNCDPFGEDLWDEIKINDLVFQGVRLCSRCKVPTVNQETGVMGKAE 241
Query: 260 PTETLLTFRSDEVLRPSHKNKRQVYFGQNLVCKESLS-AKGKG-RIIKVSDPVYVLERFP 317
PTETL+ FRSD VL P K + +V+FG+ +V +L+ +G+G + IKV D + V+ + P
Sbjct: 242 PTETLMKFRSDNVLMPDKKPRGKVFFGKEMVWNWNLTNTEGEGKKTIKVGDTISVIRKIP 301
Query: 318 SSDEA 322
S EA
Sbjct: 302 SRAEA 306
>AT1G30910.1 | chr1:11000912-11002801 FORWARD LENGTH=319
Length = 318
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/302 (60%), Positives = 225/302 (74%), Gaps = 1/302 (0%)
Query: 21 EPAATVRSILIYPIKSCRGISVPQAPITSTGFRWDRQWVVVNSKGRAYTQRVEPKLALVE 80
E AA V S+ +YPIKSCRGIS+ QA +T TGFRWDR W++VNSKGR TQRVEPKL+L+E
Sbjct: 16 EVAARVSSLFVYPIKSCRGISLSQAALTPTGFRWDRNWLIVNSKGRGLTQRVEPKLSLIE 75
Query: 81 VEMPPEAFAEEWRPTADSYLVGRAPGMDPLKIPLSAEQAIINDVSVWEWSGSAYDEGAEA 140
VEMP AF E+W P S +V RAPGMD LK+ L+ I + VSVWEWSGSA DEG EA
Sbjct: 76 VEMPKHAFGEDWEPEKSSNMVVRAPGMDALKVSLAKPDKIADGVSVWEWSGSALDEGEEA 135
Query: 141 AEWFSSYFGNPSRLVRFKEGSEIRPTNPDYAQGYKIMFTDCFPFLMASQGSLDALNEVLK 200
++WF+++ G P RLVRF E RP +P+YA G+ MF+D +PFL+ SQGSLD+LN++LK
Sbjct: 136 SQWFTNFVGKPCRLVRFNSAYETRPVDPNYAPGHIAMFSDMYPFLLISQGSLDSLNKLLK 195
Query: 201 EPVPMNRFRPNILVDGCHPYSEDLWKTIKINKLTFQGVKLCNRCKVPTINQENGILGTEP 260
EPVP+NRFRPNI VDGC P++EDLW I IN TF GVKLC+RCKVPTI+QE GI G EP
Sbjct: 196 EPVPINRFRPNIFVDGCEPFAEDLWTEILINGFTFHGVKLCSRCKVPTISQETGIGGQEP 255
Query: 261 TETLLTFRSDEVLRPSHKNKRQVYFGQNLVCKESLSAKGKGRIIKVSDPVYVLERFPSSD 320
ETL TFRSD+VL+P K ++YFGQN+V K+ G G+ I++ D V VL + S
Sbjct: 256 IETLRTFRSDKVLQPKSKPHGKIYFGQNMVWKDGF-GDGIGKTIEIGDSVVVLRKLSSPA 314
Query: 321 EA 322
EA
Sbjct: 315 EA 316
>AT1G16540.1 | chr1:5659465-5665201 FORWARD LENGTH=820
Length = 819
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 38/293 (12%)
Query: 22 PAATVRSILIYPIKSCRGISVPQAPITSTGFRWDRQWVVVNSKGRAYTQRVEPKLALVEV 81
P+ ++SI +YPIKSC G SV + P+ TG DR+W+V G TQ+ P+++L++
Sbjct: 527 PSHYLKSITVYPIKSCAGFSVIRWPLCRTGLLHDREWMVQGLTGEILTQKKVPEMSLIKT 586
Query: 82 EMPPEA---FAEEWRPTADSYLVGRAPGMDPLKIPLSAEQAIINDVSVWEWSGSAYDEGA 138
+ E E R ++ ++ +P + I+ + +E
Sbjct: 587 FIDLEEGLLSVESSRCEDKLHIRIKSDSYNPRNDEFDSHANILEN----------RNEET 636
Query: 139 EAAEWFSSYFGNPSRLVRFKEGSEIRPTNPDYAQGY------KIMFTDCFPFLMASQGSL 192
WF++ G +L+R+ + N + + G I F + FL+ S+ S+
Sbjct: 637 RINRWFTNAIGRQCKLLRYSSSTSKDCLNRNKSPGLCRDLESNINFANEAQFLLISEESV 696
Query: 193 DALNEVLK----------EPVPMNRFRPNILVDGCHPYSEDLWKTIKINKLTFQGVKLCN 242
LN L+ E + +RFRPN+++ G PY ED WKT+KI F + CN
Sbjct: 697 ADLNRRLEAKDEDYKRAHEKLNPHRFRPNLVISGGEPYGEDKWKTVKIGDNHFTSLGGCN 756
Query: 243 RCKVPTINQENGIL--GTEPTETLLTFRS-------DEVLRPSHKNKRQVYFG 286
RC++ I+ E G++ EP TL ++R +LR KRQ + G
Sbjct: 757 RCQMINISNEAGLVKKSNEPLTTLASYRRVKGKILFGTLLRYEIDEKRQCWIG 809
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,458,598
Number of extensions: 316977
Number of successful extensions: 608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)