BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0558200 Os09g0558200|AK103673
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297 160 1e-39
AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543 59 4e-09
AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373 52 5e-07
>AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297
Length = 296
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 145/286 (50%), Gaps = 46/286 (16%)
Query: 22 KRDEWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSST 81
KRDEWSE + LLEAYE+KW+LRNRAKLK DW D+A VS+ A T P
Sbjct: 34 KRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSR-----ATHTKSP---- 84
Query: 82 AKTPNQCKNKIESMKKRYXXXXXXXXXXXXXXXXXXXXWRFFARMDGLLKGPAGSGQPQA 141
KT QCKNKIESMKKRY W + R+D LL+G QPQA
Sbjct: 85 -KTQTQCKNKIESMKKRYRSESATADGSS---------WPLYPRLDHLLRGTQPQPQPQA 134
Query: 142 ELSNSIDLRAPPPAKVEVDVDADFVSQLADAGPGALSELVSAYANGSI-QEKLDKVENSG 200
L P V + A A P +S + G I +E K EN
Sbjct: 135 VL----------PLNCSVPLLLLEPPLPAVAHPPQIS--YGSNGVGKIPKEDGFKPENKP 182
Query: 201 HVEGRAAESDVNVSSPRIKEANEDAEEVDKVWDMSKKRKNTEF--DIAKSIELLASSFLK 258
+ AE D + S+P +K KV KR+ E +IA SI LA ++
Sbjct: 183 E---KDAEMDTDSSTPVVK---------TKVRGKKVKRRYKEEKEEIAGSIRWLAEVVMR 230
Query: 259 IERARMDLYRETERMRVEAEIKKGEMELKRTEIMAKTHLQIAKLFA 304
ERARM+ +E ERMR EAE K+GE++LKRTEIMA T L+IA++FA
Sbjct: 231 SERARMETMKEIERMRAEAEAKRGELDLKRTEIMANTQLEIARIFA 276
>AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543
Length = 542
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 23 RDEWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSSTA 82
R+EWS++ I LL+AY K+ NR L+ DW ++A VS C +
Sbjct: 158 REEWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERC------------EKLS 205
Query: 83 KTPNQCKNKIESMKKRY 99
K+ QCKNKI+++KKRY
Sbjct: 206 KSVEQCKNKIDNLKKRY 222
>AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373
Length = 372
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 26 WSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSSTAKTP 85
WS + L++AY KW NR LK + W ++A V A+C P KT
Sbjct: 64 WSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGANC----------PDVILKKTA 113
Query: 86 NQCKNKIESMKKRYXXXXXXXXXXXXXXXXXXXXWRFFARMDGLLKGP 133
QC++K+E ++KRY W F RM+ + P
Sbjct: 114 VQCRHKMEKLRKRY--RTEIQRARSVPVARFISSWVHFKRMEAMENRP 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,279,695
Number of extensions: 233472
Number of successful extensions: 859
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 5
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)