BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0553700 Os09g0553700|AK070189
         (287 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19900.1  | chr5:6728561-6730045 REVERSE LENGTH=495            134   4e-32

>AT5G19900.1 | chr5:6728561-6730045 REVERSE LENGTH=495
          Length = 494

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 78/113 (69%), Gaps = 9/113 (7%)

Query: 75  PRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEMAKEKWGVDGYGSMK 134
           PRNTTS++IRAK++GG+A LVSPCPVTPAVLPTP  SP+REV+ +MAKE+WGVDGYGSMK
Sbjct: 186 PRNTTSFIIRAKKSGGIAELVSPCPVTPAVLPTPMFSPSREVLGDMAKEEWGVDGYGSMK 245

Query: 135 GLIRLRSQAADAGGLP------XXXXXXXXXXXXXXXXXXRRLDHDLSRFEMV 181
           GLIRLR   AD   L                         RRLDHDLSRFEM+
Sbjct: 246 GLIRLR---ADGNELEPYEEDDEDEGGSSESDVEEHVEVERRLDHDLSRFEMI 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,945,820
Number of extensions: 81550
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)