BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0537700 Os09g0537700|AK061438
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223 166 1e-41
AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229 160 9e-40
AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231 152 1e-37
AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248 135 3e-32
AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260 62 3e-10
>AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223
Length = 222
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 4/203 (1%)
Query: 30 FDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKSFMTFDSSENTAVVRCNSDNPFD 89
FDF+Y +L WPGAYC DS + CC P+ G P+ DF + + CN D+ FD
Sbjct: 22 FDFFYFVLQWPGAYC-DSRHSCCYPQTGKPAADFGIHGLWP-NYKTGGWPQNCNPDSRFD 79
Query: 90 INKLDSIENNLNHYWSNIKCPRTDGVNSWKSEWNSYGVC--SGLKELDYFKAGLQLRKNA 147
++ + ++L W + CP DG+ W EW +G C S L + DYF+AGL+L++ A
Sbjct: 80 DLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKA 139
Query: 148 DVLSALAEQGIKPDYQLYNTAFIKWAVNQKLGVTPGVQCRDGPFGKKQLYEIYLCVDKDA 207
++L AL GIKPD + Y I+ + Q +G PG++C QLY+IYLCVD A
Sbjct: 140 NLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSA 199
Query: 208 KSFIDCPVLPNLSCPAEVLFHPF 230
FI+CPV+P+ C + V F F
Sbjct: 200 SKFINCPVMPHGRCDSRVQFPKF 222
>AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229
Length = 228
Score = 160 bits (404), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 4/203 (1%)
Query: 30 FDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKSFMTFDSSENTAVVRCNSDNPFD 89
FDF+Y +L WPGAYC D+ CC P G P+ DF + + + + C+ D+ FD
Sbjct: 28 FDFFYFVLQWPGAYC-DTSRACCYPTSGKPAADFGIHGLWP-NYNGGSWPSNCDPDSQFD 85
Query: 90 INKLDSIENNLNHYWSNIKCPRTDGVNSWKSEWNSYGVCSG--LKELDYFKAGLQLRKNA 147
+++ + ++L W + CP +G N W+ EW +G CS + + +YF+ L+L++ A
Sbjct: 86 RSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVMDQHEYFENALKLKQKA 145
Query: 148 DVLSALAEQGIKPDYQLYNTAFIKWAVNQKLGVTPGVQCRDGPFGKKQLYEIYLCVDKDA 207
++L L GI PD YN I A+ +G TPG++C P QL++IY+CVD
Sbjct: 146 NLLQILKNSGINPDDGFYNLDKITNAIKDGIGFTPGIECNKDPERNAQLHQIYICVDTSG 205
Query: 208 KSFIDCPVLPNLSCPAEVLFHPF 230
FI+CPVLP SCP+++ F F
Sbjct: 206 TEFIECPVLPRGSCPSQIQFSKF 228
>AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231
Length = 230
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%)
Query: 8 LCLILGLLATSGPAKTVNADSPFDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKS 67
LCLI L+ ++ FDF+Y + WPG+YC D++ CC P G P+ DF +
Sbjct: 8 LCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYC-DTQKKCCYPNSGKPAADFGIHG 66
Query: 68 FMTFDSSENTAVVRCNSDNPFDINKLDSIENNLNHYWSNIKCPRTDGVNSWKSEWNSYGV 127
+ + T C++ PFD + + + ++ W + CP G W+ EW +G
Sbjct: 67 LWP-NYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGT 125
Query: 128 CSG--LKELDYFKAGLQLRKNADVLSALAEQGIKPDYQLYNTAFIKWAVNQKLGVTPGVQ 185
CS + + +YF+ L L++ ++L AL + GI PD + Y+ I+ ++ + +G TP V+
Sbjct: 126 CSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVE 185
Query: 186 C-RDGPFGKKQLYEIYLCVDKDAKSFIDCPVLPNLSCPAEVLFHPF 230
C RDG G QLY++YLCVD+ I+CPV P+ C AE+ F F
Sbjct: 186 CNRDGS-GNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIEFPSF 230
>AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248
Length = 247
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 9/224 (4%)
Query: 10 LILGLLATSGPAKTVNADSP-FDFYYLILMWPGAYCTDSEYGCCVPKYGYPSEDFFVKSF 68
+I+ LL + + P F+F+Y + WPGA C DS+ GCC P G + DF +
Sbjct: 5 IIVSLLILQSLVVSSSQTEPDFNFFYWVNYWPGAIC-DSQKGCCPPTKGNTASDFIIHGL 63
Query: 69 MTFDSSENTAVVRCNSDNPFDINKLDSIENNLNHYWSNI---KCPRTDGVNSWKSEWNSY 125
+ T C+ N FDI+K+ + + W+ CP + N W+ EWN +
Sbjct: 64 WP-QFNNGTWPAFCDQTNLFDISKISDLVCQMEKKWTEWGVWACPSNE-TNLWEHEWNKH 121
Query: 126 GVC--SGLKELDYFKAGLQLRKNADVLSALAEQGIKPDYQLYNTAFIKWAVNQKLGVTPG 183
G C S + YF+ L+ + +L+ L ++GIKP+ Y+ IK A+ +G PG
Sbjct: 122 GTCVQSIFDQHSYFRTNLKFKHKVHLLNILIQKGIKPNDGFYSLDEIKNAIKCAIGFAPG 181
Query: 184 VQCRDGPFGKKQLYEIYLCVDKDAKSFIDCPVLPNLSCPAEVLF 227
++C + G KQL++IY+C+D AK F++CP +P+ SC +++ F
Sbjct: 182 IECNEDVKGNKQLFQIYICLDNYAKEFVECPYVPDKSCASKIKF 225
>AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260
Length = 259
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 34/263 (12%)
Query: 8 LCLILGLLATSGP-----AKTVNADSPFDFYYLILMWPGAYCTDSEYGC----CVPKYGY 58
LCL+L + +G + + FD++ L L WPG YC + + C C
Sbjct: 5 LCLLLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDA 64
Query: 59 PSEDFFVKSFMTFDSSENTAVVRCNSDNPFDINKLDSIENNLNHYWSNIKCPRTDGVNS- 117
P++ F + + + + C + F ++ ++ + L YW ++ C N
Sbjct: 65 PTQ-FTIHGL--WPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGG 121
Query: 118 ----WKSEWNSYGVCSG---LKELDYFKAGLQLRKNADVLSALAEQG-IKPDYQLYNTAF 169
W EW +G CS E +YF L L +V L + G + + + Y
Sbjct: 122 KGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGG 181
Query: 170 IKWAVNQKLGVTPGVQCRDGPFGKKQLYEIYLCVDKDAKSFIDCPVLPNL----SCPAEV 225
I A+ +TP V C+ + + EI +C KD K DC +L SCP V
Sbjct: 182 IVTAIQNAFHITPEVVCK-----RDAIDEIRICFYKDFKP-RDCVGSQDLTSRKSCPKYV 235
Query: 226 LFHPFHTWMLNTTSAANIVMPTE 248
P +T + A + MPTE
Sbjct: 236 SL-PEYTPL--DGEAMVLKMPTE 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,265,654
Number of extensions: 281137
Number of successful extensions: 650
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 5
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)