BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0525700 Os09g0525700|AK064676
         (425 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11720.1  | chr4:7063291-7066784 FORWARD LENGTH=706            320   1e-87

>AT4G11720.1 | chr4:7063291-7066784 FORWARD LENGTH=706
          Length = 705

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/316 (52%), Positives = 201/316 (63%), Gaps = 18/316 (5%)

Query: 1   MLLERVLFTLDGLECNKIGVGYEAFRSQPNFCSSPLDSCLGDQLSKFWEIDKNRVNNSQP 60
           MLLERV FTLDGLECNKIGVGYEAF +QPNFCSSP  SCL +QL  F E D NR++  Q 
Sbjct: 281 MLLERVRFTLDGLECNKIGVGYEAFNTQPNFCSSPYWSCLHNQLWNFRESDINRIDRHQL 340

Query: 61  PQYVVLGKFERINQYPNAGVHTFSVGIPEVLNTNLMIELSADDIEYVYQRXXXXXXXXXX 120
           P Y + G+FERINQ+PNAG H+FS+G+ E LNTNLMIEL ADDIEYV+QR          
Sbjct: 341 PLYGLEGRFERINQHPNAGPHSFSIGVTETLNTNLMIELRADDIEYVFQRSPGKIINIAI 400

Query: 121 XXFEALSQVGSARVKTKNIGRLEASYSLTFDCLSGINPVEEQYFIMKPDEKLIRTFDLRS 180
             FEAL+Q G A V  KN G +EASYSLTFDC  G+  VEEQ+FI+KP     R+F L  
Sbjct: 401 PTFEALTQFGVAAVIIKNTGEVEASYSLTFDCSKGVAFVEEQFFIIKPKAVTTRSFKLYP 460

Query: 181 STDQASNYTCQAILKASDFSELDRKESQFSTTATVLNNGTQIGSSENHTKGGIWGFFEAI 240
           + DQA+ Y C AILK S FSE+DR E QFSTTATVL+NGTQ+ +     +    GFF++I
Sbjct: 461 TKDQAAKYICTAILKDSQFSEVDRAECQFSTTATVLDNGTQVTNPFQIPETQPKGFFDSI 520

Query: 241 KAWCAKMWHMLINFFTGTTCSTRCWSFLKFVIHGXXXXXXXXXX---------------- 284
           +    K+ + L++F TG TC  +C SF  F  H                           
Sbjct: 521 RILWTKIINGLVDFITGDTCRNKCSSFFDFSCHIQYVCLSWMVMFGLLLALFPITCLLLW 580

Query: 285 --HRKGLFDPLYYWWD 298
             H+KGLFDP Y WW+
Sbjct: 581 LLHQKGLFDPCYDWWE 596



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,872,971
Number of extensions: 292295
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)