BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0524800 Os09g0524800|AK105833
(334 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 256 8e-69
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 244 5e-65
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 224 3e-59
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 142 3e-34
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 96 3e-20
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 83 2e-16
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 256 bits (655), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 174/221 (78%), Gaps = 1/221 (0%)
Query: 37 EWEVRPGGMLVQKRSPDGDAPAAPVPT-IRVKVKFNGVYHEIYINSQASFGELKKQLSAP 95
+ E+RPGGMLVQKR+PD D P P IRV++K+ VYHEI I+ QASFGELKK L+ P
Sbjct: 39 DLEIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGELKKMLTGP 98
Query: 96 TGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAA 155
TG+H +DQK++YKDKERDSKAFLD++GVKD+SKMVL+EDP +Q KR LE R+ K E+A+
Sbjct: 99 TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKAS 158
Query: 156 KSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKV 215
K+IS ISL+VD+L +V+A E + KGG++ + D+VT+ E LMNEL+KLDAI AEG+VK+
Sbjct: 159 KAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKL 218
Query: 216 QRRMQEKRVQKYVESLDAIRAKNAASHNKASGNGHAKPRAP 256
QR+MQ KRVQ YVE+LDA++ KN+ ++ + + A+ AP
Sbjct: 219 QRKMQVKRVQNYVETLDALKVKNSMANGQQKQSSTAQRLAP 259
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 164/221 (74%), Gaps = 5/221 (2%)
Query: 36 DEWEVRPGGMLVQKRS-PDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSA 94
+EWE RPGGM+VQ+R+ + D P RV+VK+ VYHEI INSQ+SFGELKK LS
Sbjct: 20 NEWESRPGGMVVQRRTDQNSDVPR----VFRVRVKYGSVYHEININSQSSFGELKKMLSD 75
Query: 95 PTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERA 154
GLH ED K++YKDKERDSK FLD+ GVKDRSK+V+ EDP +Q KRLL +R+ E+A
Sbjct: 76 QVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRLLAKRKNAAIEKA 135
Query: 155 AKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEGEVK 214
+KSIS IS +VD+LA +V+A E ++ KGG+V + +V L E LMN+L++LDAI A+G+VK
Sbjct: 136 SKSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIADGDVK 195
Query: 215 VQRRMQEKRVQKYVESLDAIRAKNAASHNKASGNGHAKPRA 255
+ R+MQ +RVQKYVE+LD ++ KN+A + + + KP+
Sbjct: 196 LMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQT 236
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 161/214 (75%), Gaps = 14/214 (6%)
Query: 37 EWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPT 96
E E+RPGGM+VQKR+ D ++ IRV+VK+ V+HEI INSQ++FGELKK LS T
Sbjct: 15 EMELRPGGMVVQKRT---DHSSSVPRGIRVRVKYGSVHHEISINSQSTFGELKKILSGAT 71
Query: 97 GLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAK 156
G+H +D +I+YKDKERDSK FLD++GVKDRSK++L+EDP +Q KRLLE R+ E+++K
Sbjct: 72 GVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKIATKEKSSK 131
Query: 157 SISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQ 216
+IS IS V++LA +++A + ++GKGG+V + ++ L E LMN+LVKLDAI+ +G+VK++
Sbjct: 132 AISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAISGDGDVKLK 191
Query: 217 RRMQ-----------EKRVQKYVESLDAIRAKNA 239
++MQ E+R+ KYVE+LD ++ KN+
Sbjct: 192 KKMQNLMIRFTNCWKEERLHKYVEALDLLKIKNS 225
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 131/217 (60%), Gaps = 17/217 (7%)
Query: 35 EDEWEVRPGGMLVQKRS------------PDGDAPAAPVPTIRVKVKFNGVYHEIYINSQ 82
E EWEVRPGGMLVQ+R PD A AA TIR+ V +H+++I++
Sbjct: 8 ESEWEVRPGGMLVQRRDDAASSDHKPLQDPDS-ASAAFAQTIRITVSHGSSHHDLHISAH 66
Query: 83 ASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRL 142
A+FG++KK L TGL + KI+++ ERD L AGVKD SK+V++ + T KR+
Sbjct: 67 ATFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTN--KRV 124
Query: 143 LEQ--RRTDKAERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNE 200
+Q T + E+A +++ ++ +VDKL+ +V ALE V G +V + E LM +
Sbjct: 125 EQQPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQ 184
Query: 201 LVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIRAK 237
L+KLD I AEG+ KVQR+ + +R+Q E++D ++A+
Sbjct: 185 LLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKAR 221
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 74/110 (67%), Gaps = 5/110 (4%)
Query: 35 EDEWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSA 94
E +WE+RPGGMLVQKR ++ + +IRV + +H++ I + ++FGELK LS
Sbjct: 46 EIKWELRPGGMLVQKRQ---ESIGEDLISIRVSTFAH--FHDLSIEATSTFGELKMVLSL 100
Query: 95 PTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLE 144
TGL P+ Q++V+K KER+ +L M GV D+ K++LLEDP + K+LL+
Sbjct: 101 LTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKLLD 150
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 37 EWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPT 96
+WE+RPGGMLVQKRS D + + ++RV + + +EI I++ ++FGELK ++ +
Sbjct: 56 KWEMRPGGMLVQKRSEDSNTE--DLISLRVST-VSQLSYEISIDANSTFGELKMMIAIVS 112
Query: 97 GLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDP 135
G+ ++Q+++++ KER+ + +L M GV D K+ LL+DP
Sbjct: 113 GIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDP 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,341,035
Number of extensions: 193424
Number of successful extensions: 753
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 6
Length of query: 334
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,392,385
Effective search space: 1972210475
Effective search space used: 1972210475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)