BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0522000 Os09g0522000|AF300972
(218 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25480.1 | chr4:13018353-13019003 REVERSE LENGTH=217 60 7e-10
AT5G51990.1 | chr5:21117113-21117787 REVERSE LENGTH=225 60 1e-09
AT4G25490.1 | chr4:13021921-13022562 REVERSE LENGTH=214 60 1e-09
AT4G25470.1 | chr4:13015436-13016086 REVERSE LENGTH=217 56 1e-08
AT1G63030.1 | chr1:23367603-23368148 REVERSE LENGTH=182 47 9e-06
>AT4G25480.1 | chr4:13018353-13019003 REVERSE LENGTH=217
Length = 216
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 84/211 (39%), Gaps = 24/211 (11%)
Query: 10 TVWSEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFX 69
T+ S PK+PAGR KFRET WVCEVR P + +R+WLGTF
Sbjct: 28 TLASSCPKKPAGRKKFRET-----RHPIYRGVRRRNSGKWVCEVREPNKK-TRIWLGTFQ 81
Query: 70 XXXXXXXXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXXXXXXXXFQR 129
NFADSAWR+ +P S FQ
Sbjct: 82 TAEMAARAHDVAALALRGRSACLNFADSAWRL-RIPES---TCAKDIQKAAAEAALAFQD 137
Query: 130 QSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAGSYYASLA 189
+ ++ + D EE + + A AF + D F + S A++A
Sbjct: 138 EMCDATTD-----HGFDMEETLVEAIYTAEQS---ENAFYMHDEAMF---EMPSLLANMA 186
Query: 190 QGLLVEPPAAGAWWEDGELAG--SDMPLWSY 218
+G+L+ P+ W + E+ G D+ LWSY
Sbjct: 187 EGMLLPLPSV-QWNHNHEVDGDDDDVSLWSY 216
>AT5G51990.1 | chr5:21117113-21117787 REVERSE LENGTH=225
Length = 224
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 81/207 (39%), Gaps = 19/207 (9%)
Query: 13 SEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFXXXX 72
S PK+ AGR KFRET WVCEVR P + SR+WLGTF
Sbjct: 34 SSCPKKRAGRKKFRET-----RHPIYRGVRQRNSGKWVCEVREPNKK-SRIWLGTFPTVE 87
Query: 73 XXXXXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXXXXXXXXFQRQSA 132
NFADSAWR+ +P + FQ ++
Sbjct: 88 MAARAHDVAALALRGRSACLNFADSAWRL-RIPET---TCPKEIQKAASEAAMAFQNETT 143
Query: 133 APSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAGSYYASLAQGL 192
S A + E + AE + G F +DD G +++ ++A+G+
Sbjct: 144 TEGSKTAAEAEEAAGEGVREG---ERRAEEQNGGVFYMDDEALLG---MPNFFENMAEGM 197
Query: 193 LVEPPAAGAWWEDGELAG-SDMPLWSY 218
L+ PP G W + G D+ LWS+
Sbjct: 198 LLPPPEVG--WNHNDFDGVGDVSLWSF 222
>AT4G25490.1 | chr4:13021921-13022562 REVERSE LENGTH=214
Length = 213
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 88/211 (41%), Gaps = 24/211 (11%)
Query: 10 TVWSEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFX 69
T+ + PK+PAGR KFRET WV EVR P + +R+WLGTF
Sbjct: 25 TLATSCPKKPAGRKKFRET-----RHPIYRGVRQRNSGKWVSEVREPNKK-TRIWLGTFQ 78
Query: 70 XXXXXXXXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXXXXXXXXFQR 129
NFADSAWR+ +P S FQ
Sbjct: 79 TAEMAARAHDVAALALRGRSACLNFADSAWRL-RIPES---TCAKDIQKAAAEAALAFQD 134
Query: 130 QSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAGSYYASLA 189
++ ++ N G + E+ V + E + GAF +D+ FG + ++A
Sbjct: 135 ETCDTTT-----TNHGLDMEETM-VEAIYTPEQSE-GAFYMDEETMFG---MPTLLDNMA 184
Query: 190 QGLLVEPPAAGAWWE--DGELAGSDMPLWSY 218
+G+L+ PP+ W DGE G D+ LWSY
Sbjct: 185 EGMLLPPPSV-QWNHNYDGEGDG-DVSLWSY 213
>AT4G25470.1 | chr4:13015436-13016086 REVERSE LENGTH=217
Length = 216
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 16 PKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFXXXXXXX 75
PK+PAGR KFRET WVCE+R P + +R+WLGTF
Sbjct: 34 PKKPAGRKKFRET-----RHPIYRGVRQRNSGKWVCELREPNKK-TRIWLGTFQTAEMAA 87
Query: 76 XXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXXXXXXXXFQRQSAAPS 135
NFADSAWR+ +P S FQ + +
Sbjct: 88 RAHDVAAIALRGRSACLNFADSAWRL-RIPES---TCAKEIQKAAAEAALNFQDEMCHMT 143
Query: 136 SPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAGSYYASLAQGLLVE 195
+ A D +E P + + AF +D+ G S ++A+G+L+
Sbjct: 144 TDAHGL--DMEETLVEAIYTPEQSQD-----AFYMDEEAMLG---MSSLLDNMAEGMLLP 193
Query: 196 PPAAGAWWEDGELAG-SDMPLWSY 218
P+ W + ++ G D+ LWSY
Sbjct: 194 SPSV-QWNYNFDVEGDDDVSLWSY 216
>AT1G63030.1 | chr1:23367603-23368148 REVERSE LENGTH=182
Length = 181
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 81/214 (37%), Gaps = 44/214 (20%)
Query: 10 TVWSEPPKRPAGRTKFRETXXXXXXXXXXXXXXXXXXXXWVCEVRVPGARGSRLWLGTFX 69
TV PK+ AGR F+ET WVCEVR P R+WLGT+
Sbjct: 7 TVAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDK-----WVCEVREP-IHQRRVWLGTYP 60
Query: 70 XXXXXXXXXXXXXXXXXXXXXXXNFADSAWRMPPVPASXXXXXXXXXXXXXXXXXXXFQR 129
NF+DSAWR+ PVPAS R
Sbjct: 61 TADMAARAHDVAVLALRGRSACLNFSDSAWRL-PVPASTDPDTI---------------R 104
Query: 130 QSAAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAGSYYASLA 189
++AA + AE F E VLP A+ FD D+G GM LA
Sbjct: 105 RTAAEA--AEMFR--PPEFSTGITVLPSASE--FDTS----DEG--VAGM-----MMRLA 147
Query: 190 QGLLVEPPAA-----GAWWEDGELAGSDMPLWSY 218
+ L+ PP + + + D E+ D+ LWSY
Sbjct: 148 EEPLMSPPRSYIDMNTSVYVDEEMCYEDLSLWSY 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,981,291
Number of extensions: 129996
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)