BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0520200 Os09g0520200|Os09g0520200
(316 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24160.1 | chr4:12539871-12542210 FORWARD LENGTH=419 443 e-125
AT1G64670.1 | chr1:24030990-24033474 REVERSE LENGTH=470 62 3e-10
AT5G41900.1 | chr5:16769032-16771567 FORWARD LENGTH=472 58 6e-09
AT4G36530.2 | chr4:17240120-17241770 REVERSE LENGTH=379 54 1e-07
AT1G77420.1 | chr1:29093641-29095442 FORWARD LENGTH=383 51 1e-06
AT4G12830.1 | chr4:7531189-7533327 FORWARD LENGTH=394 50 1e-06
AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360 50 1e-06
>AT4G24160.1 | chr4:12539871-12542210 FORWARD LENGTH=419
Length = 418
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/242 (85%), Positives = 228/242 (94%)
Query: 26 RWGRAWPSALRWIPTSTDRIIAAEKRLLSIVKTGYVQEQVNIGSSPPGSKVRWFRSSSDE 85
RW WP++LRWIPTSTD IIAAEKRLLSI+KT YVQEQV+IGS PPGSK+RWFRS+S+E
Sbjct: 46 RWKILWPNSLRWIPTSTDYIIAAEKRLLSILKTPYVQEQVSIGSGPPGSKIRWFRSTSNE 105
Query: 86 PRFINTVTFDSEENAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDF 145
R+INTVTFD++E APTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDF
Sbjct: 106 SRYINTVTFDAKEGAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDF 165
Query: 146 TCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALQHPEHVQHLILVGPA 205
TC+STEETEAWFIDSFEEWRKA+NLSNFILLGHSFGGYVAAKYAL+HPEHVQHLILVG A
Sbjct: 166 TCRSTEETEAWFIDSFEEWRKAQNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSA 225
Query: 206 GFSSETEHSSEWLTKFRATWKGMLVNHLWESNFTPQRIVRGLGPWGPGLVQRYTSARFGS 265
GFS+E + SEWLTKFRATWKG ++NHLWESNFTPQ++VRGLGPWGPGLV RYT+ARFG+
Sbjct: 226 GFSAEADAKSEWLTKFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPGLVNRYTTARFGA 285
Query: 266 HS 267
HS
Sbjct: 286 HS 287
>AT1G64670.1 | chr1:24030990-24033474 REVERSE LENGTH=470
Length = 469
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 81 SSSDEPRFINTVTFDSEENAPTLVMVHGYGASQGF----FFRNF-DALASRFRVIAIDQL 135
SSS++ F+N + +V +HG+ +S F F NF D+ S +R +A+D L
Sbjct: 163 SSSNQSLFVNVQQPTDNKAQENVVFIHGFLSSSTFWTETLFPNFSDSAKSNYRFLAVDLL 222
Query: 136 GWGGSSRPD---FTCKS-TEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALQ 191
G+G S +P+ +T K E E I F L F L+ HS G +A A++
Sbjct: 223 GYGKSPKPNDSLYTLKEHLEMIERSVISQFR-------LKTFHLVAHSLGCILALALAVK 275
Query: 192 HPEHVQHLILVGPAGFS 208
HP ++ L L+ P +S
Sbjct: 276 HPGAIKSLTLLAPPYYS 292
>AT5G41900.1 | chr5:16769032-16771567 FORWARD LENGTH=472
Length = 471
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 78 WFRSSSDEPRFINTVT-FDSEENAPTLVMVHGYGASQGF----FFRNF-DALASRFRVIA 131
W S++ + F+ D+++ +V +HG+ +S F F NF D+ S +R IA
Sbjct: 167 WLTSTNRDSLFVKVQQPKDNKKARDNVVFIHGFVSSSAFWTETLFPNFSDSAKSNYRFIA 226
Query: 132 IDQLGWGGSSRPD---FTCKS-TEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAK 187
+D LG+G S +P+ +T + E E I F+ L F ++ HS G +A
Sbjct: 227 VDLLGYGRSPKPNDSLYTLREHLEMIEKSVISKFK-------LKTFHIVAHSLGCILALA 279
Query: 188 YALQHPEHVQHLILVGP 204
A++HP ++ L L+ P
Sbjct: 280 LAVKHPGAIKSLTLLAP 296
>AT4G36530.2 | chr4:17240120-17241770 REVERSE LENGTH=379
Length = 378
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 98 ENAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWF 157
E +P LV++HG+GAS + N LA +++V A+D LG+G S + + T+
Sbjct: 98 EGSP-LVLIHGFGASVFHWRYNIPELAKKYKVYALDLLGFGWSDKALIEYDAMVWTDQ-V 155
Query: 158 IDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALQHPEHVQHLILVGPAG-FSSETEHSSE 216
ID +E K +++G+S GG+ A A+ PE V + L+ AG F++E+ E
Sbjct: 156 IDFMKEVVKEPA----VVVGNSLGGFTALSVAVGLPEQVTGVALLNSAGQFAAESRKREE 211
Query: 217 ----WLTKF 221
+TKF
Sbjct: 212 ADETVITKF 220
>AT1G77420.1 | chr1:29093641-29095442 FORWARD LENGTH=383
Length = 382
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 55 IVKTGYVQEQVNIG-----SSPPGSKVR-WF-RSSSDEPRFINT-VTFDSEENAPTLVMV 106
+ ++ +V Q+ + +P G + W+ R+S E F + + +E +
Sbjct: 67 LARSAFVDLQLQLDHCLFKKAPSGIRTEEWYERNSKGEDIFCKSWLPKSGDEIKAAVCFC 126
Query: 107 HGYGASQGFFFRNFDALASR-----FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSF 161
HGYG++ FFF D +A + + V AID G+G S S ++ I+ F
Sbjct: 127 HGYGSTCTFFF---DGIAKQIAGFGYGVYAIDHPGFGLSDGLHGHIPSFDDLADNAIEQF 183
Query: 162 EEWRKAKNLSNF--ILLGHSFGGYVAAKYALQHPEHVQHLILVGPAGFSSE 210
+ + L N LLG S GG VA K L+ P+ LILV P SE
Sbjct: 184 TKMKGRSELRNLPRFLLGQSMGGAVALKIHLKEPQAWDGLILVAPMCKISE 234
>AT4G12830.1 | chr4:7531189-7533327 FORWARD LENGTH=394
Length = 393
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 99 NAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFI 158
++P ++++HG+ + + + L+ +R IA D LG+G S +P T F+
Sbjct: 132 DSPPVILIHGFPSQAYSYRKTIPVLSKNYRAIAFDWLGFGFSDKPQ-AGYGFNYTMDEFV 190
Query: 159 DSFEEWRKAKNLSNFILLGHSFGGYVAAKYALQHPEHVQHLILVGP 204
S E + S L+ + KYA P+ +++LIL+ P
Sbjct: 191 SSLESFIDEVTTSKVSLVVQGYFSAAVVKYARNRPDKIKNLILLNP 236
>AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360
Length = 359
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 99 NAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFI 158
+ P LV+VHG+GA+ + +N L RV +ID +G+G S +P+ E
Sbjct: 93 SGPALVLVHGFGANSDHWRKNTPILGKTHRVYSIDLIGYGYSDKPN-----PREFGGEPF 147
Query: 159 DSFEEWRKAKNLSNFIL---------LGHSFGGYVAAKYALQHPEHVQHLILVG 203
+FE W + L++F L + +S GG V + A+ PE + L+L+
Sbjct: 148 YTFETW--GEQLNDFCLDVVKDEAFFICNSIGGLVGLQAAVSKPEICRGLMLIN 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,551,538
Number of extensions: 257415
Number of successful extensions: 750
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 8
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)