BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0519100 Os09g0519100|Os09g0519100
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46760.1 | chr5:18974231-18976009 FORWARD LENGTH=593 57 1e-08
AT4G17880.1 | chr4:9933702-9935471 REVERSE LENGTH=590 57 1e-08
AT1G32640.1 | chr1:11799042-11800913 REVERSE LENGTH=624 56 2e-08
AT4G00870.1 | chr4:362230-363639 REVERSE LENGTH=424 56 3e-08
AT4G16430.1 | chr4:9267599-9269002 FORWARD LENGTH=468 55 4e-08
AT2G46510.1 | chr2:19091187-19092887 REVERSE LENGTH=567 55 6e-08
AT1G01260.1 | chr1:109595-111367 FORWARD LENGTH=591 54 9e-08
AT5G46830.1 | chr5:19002719-19004254 FORWARD LENGTH=512 53 1e-07
>AT5G46760.1 | chr5:18974231-18976009 FORWARD LENGTH=593
Length = 592
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LRA VP VS+MDK
Sbjct: 414 LNHVEAERQRREKLNQRFYSLRAVVPNVSKMDK 446
>AT4G17880.1 | chr4:9933702-9935471 REVERSE LENGTH=590
Length = 589
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LRA VP VS+MDK
Sbjct: 415 LNHVEAERQRREKLNQRFYSLRAVVPNVSKMDK 447
>AT1G32640.1 | chr1:11799042-11800913 REVERSE LENGTH=624
Length = 623
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LRA VP VS+MDK
Sbjct: 451 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDK 483
>AT4G00870.1 | chr4:362230-363639 REVERSE LENGTH=424
Length = 423
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
+SHVEAE+QRREKLN RF LRA VP VSRMDK
Sbjct: 248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDK 280
>AT4G16430.1 | chr4:9267599-9269002 FORWARD LENGTH=468
Length = 467
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LRA VP +S+MDK
Sbjct: 319 LNHVEAERQRREKLNQRFYALRAVVPNISKMDK 351
>AT2G46510.1 | chr2:19091187-19092887 REVERSE LENGTH=567
Length = 566
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LR+ VP +S+MDK
Sbjct: 394 LNHVEAERQRREKLNQRFYALRSVVPNISKMDK 426
>AT1G01260.1 | chr1:109595-111367 FORWARD LENGTH=591
Length = 590
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDK 142
++HVEAERQRREKLN+RF LR+ VP +S+MDK
Sbjct: 432 LNHVEAERQRREKLNQRFYALRSVVPNISKMDK 464
>AT5G46830.1 | chr5:19002719-19004254 FORWARD LENGTH=512
Length = 511
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 56/149 (37%), Gaps = 24/149 (16%)
Query: 110 VSHVEAERQRREKLNRRFCDLRAAVPTVSRMDKXXXXXXXXXXXXXXXXXXXRLE----- 164
++HVEAER RREKLN RF LRA VP VS+MDK +E
Sbjct: 342 LNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHA 401
Query: 165 -----SDARQAAAARFE-PSSCXXXXXXXXXXXXXXXXXXXXLDEAVEVRKMXXXXXXXX 218
++ ++ A R PS C +EV+ M
Sbjct: 402 IEIQFNELKEIAGQRNAIPSVCKYEEKASEMM-------------KIEVKIMESDDAMVR 448
Query: 219 XXXXXXXXXPARLMGALRSLELPVQHACV 247
ARLM AL LEL V HA +
Sbjct: 449 VESRKDHHPGARLMNALMDLELEVNHASI 477
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,751,865
Number of extensions: 54725
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 8
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)