BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0518900 Os09g0518900|AK072714
         (344 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01180.1  | chr1:75633-76556 FORWARD LENGTH=308                243   1e-64

>AT1G01180.1 | chr1:75633-76556 FORWARD LENGTH=308
          Length = 307

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/247 (51%), Positives = 156/247 (63%), Gaps = 7/247 (2%)

Query: 88  PRSPPHDLFRFREECGEAIPSDAVVRTLLDKLFDGESPYESFXXXXXXXXXXXXXXXXXG 147
           P+    D FR    CG  +P + + +T++D++F+G SPY  F                 G
Sbjct: 61  PQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIK--G 118

Query: 148 WGSTGAVFAELIEEVRPDVIVELGAFLGASALHMAAVSKNLSLSPA-ILCVDDFRGWXXX 206
           WGS GAVF  LI  V+P  IVE+G+FLGASA+HMA +++ L L    ILCVDDFRGW   
Sbjct: 119 WGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGF 178

Query: 207 XXXXXXXXXXXXHGDALLLPQFMSNVXXXXXXXXXRVLPLPFSTASALAALCHWGVYADL 266
                       +GD LL+ QFM NV          +LP+PFST SAL  LC WGV ADL
Sbjct: 179 RDRFKDMALV--NGDVLLMYQFMQNVVISDFSGS--ILPVPFSTGSALEKLCEWGVTADL 234

Query: 267 IEVDAGHDFHSAWADINLAWAVLRPGGVMFGHDYFTAADDRGVRRAVTLFARVKGLTVRP 326
           +E+DAGHDF+SAWADIN A  +LRPGGV+FGHDYFTAAD+RGVRRAV LFA +  L V+ 
Sbjct: 235 VEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKT 294

Query: 327 HGQHWVL 333
            GQHWV+
Sbjct: 295 DGQHWVI 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,054,126
Number of extensions: 207014
Number of successful extensions: 412
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)