BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0516600 Os09g0516600|AY054407
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06130.1 | chr1:1858034-1860640 REVERSE LENGTH=332 427 e-120
AT2G31350.1 | chr2:13368451-13370802 FORWARD LENGTH=325 408 e-114
AT2G43430.1 | chr2:18035569-18038064 REVERSE LENGTH=332 383 e-107
AT3G10850.1 | chr3:3397756-3399522 REVERSE LENGTH=259 191 6e-49
AT1G53580.1 | chr1:19991542-19993250 REVERSE LENGTH=295 67 1e-11
>AT1G06130.1 | chr1:1858034-1860640 REVERSE LENGTH=332
Length = 331
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/336 (61%), Positives = 252/336 (75%), Gaps = 7/336 (2%)
Query: 1 MRMLSKACSLVASSLPRCSSSAAPTIRGQPSLLPSVRKEWLGKPLLYGIGTLLVMPLRTL 60
M+ +SK S A+S RCS + QP + P VR+ + K L+ G+ L PLRTL
Sbjct: 1 MQAISKVSS--AASFFRCSRK----LVSQPCVRPCVRQLHVRKGLVSGVMKLFSSPLRTL 54
Query: 61 HGVGRMFGAGRFLCNMTSVSSSLQIELVPCLQDNYAYILHXXXXXXXXXXXPSEATPIIN 120
G+ RF C++++VSSSLQIELVPCL DNYAYILH PSEA P+++
Sbjct: 55 RDAGKSVRISRF-CSVSNVSSSLQIELVPCLTDNYAYILHDEDTGTVGVVDPSEAVPVMD 113
Query: 121 ALEKRNQNLTYILNTHHHYDHTGGNLELKAKYGAKVIGSAKDRDRIPGIDITLSEGDTWM 180
AL+K ++NLTYILNTHHHYDHTGGNLELK +YGAKVIGSA DRDRIPGID+ L + D WM
Sbjct: 114 ALQKNSRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAADRDRIPGIDVALKDADKWM 173
Query: 181 FAGHQVLVMETPGHTSGHVCYHFPGSGAIFTGDTLFSLSCGKLFEGTPQQMYSSLQKIIA 240
FAGH+V +METPGHT GH+ ++FPG+ AIFTGDTLFSLSCGKLFEGTP+QM +SLQ+IIA
Sbjct: 174 FAGHEVHIMETPGHTRGHISFYFPGARAIFTGDTLFSLSCGKLFEGTPEQMLASLQRIIA 233
Query: 241 LPDETRVYCGHEYTLSNSKFALSIEPGNKDLQEYAANAADLRKRNTPTVPTTIGREKQCN 300
LPD+T VYCGHEYTLSNSKFALSIEP N+ LQ YAA A+LR + PT+PTT+ EK CN
Sbjct: 234 LPDDTSVYCGHEYTLSNSKFALSIEPTNEVLQSYAAYVAELRDKKLPTIPTTMKMEKACN 293
Query: 301 PFLRTSSPEIKNTLSIPDHFDDARVLEVVRRAKDNF 336
PFLRT + +I+ L IP+ D+A L ++RRAKDNF
Sbjct: 294 PFLRTENTDIRRALGIPETADEAEALGIIRRAKDNF 329
>AT2G31350.1 | chr2:13368451-13370802 FORWARD LENGTH=325
Length = 324
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/336 (59%), Positives = 252/336 (75%), Gaps = 12/336 (3%)
Query: 1 MRMLSKACSLVASSLPRCSSSAAPTIRGQPSLLPSVRKEWLGKPLLYGIGTLLVMPLRTL 60
M+ +SKA S A+S RCS + S P VR+ + K L+ + L+ PLRTL
Sbjct: 1 MQTISKASS--ATSFFRCSR--------KLSSQPCVRQLNIRKSLVCRVMKLVSSPLRTL 50
Query: 61 HGVGRMFGAGRFLCNMTSVSSSLQIELVPCLQDNYAYILHXXXXXXXXXXXPSEATPIIN 120
G G+ +F C++++VSS LQIELVPCL+DNYAYILH PSEA PII+
Sbjct: 51 RGAGKSIRVSKF-CSVSNVSS-LQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIID 108
Query: 121 ALEKRNQNLTYILNTHHHYDHTGGNLELKAKYGAKVIGSAKDRDRIPGIDITLSEGDTWM 180
+L++ +NLTYILNTHHHYDHTGGNLELK +YGAKVIGSA D+DRIPGID+ L +GD WM
Sbjct: 109 SLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWM 168
Query: 181 FAGHQVLVMETPGHTSGHVCYHFPGSGAIFTGDTLFSLSCGKLFEGTPQQMYSSLQKIIA 240
FAGH+V VM+TPGHT GH+ +FPGS AIFTGDT+FSLSCGKLFEGTP+QM +SLQKI +
Sbjct: 169 FAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITS 228
Query: 241 LPDETRVYCGHEYTLSNSKFALSIEPGNKDLQEYAANAADLRKRNTPTVPTTIGREKQCN 300
LPD+T +YCGHEYTLSNSKFALS+EP N+ LQ YAA+ A+LR + PT+PTT+ EK CN
Sbjct: 229 LPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACN 288
Query: 301 PFLRTSSPEIKNTLSIPDHFDDARVLEVVRRAKDNF 336
PFLR+S+ +I+ L IP+ D+A L ++R+AKD+F
Sbjct: 289 PFLRSSNTDIRRALRIPEAADEAEALGIIRKAKDDF 324
>AT2G43430.1 | chr2:18035569-18038064 REVERSE LENGTH=332
Length = 331
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/337 (55%), Positives = 237/337 (70%), Gaps = 7/337 (2%)
Query: 1 MRMLSKACSLVA-SSLPRCSSSAAPTIRGQPSLLPSVRKEWLGKPLLYGIGTLLVMPLRT 59
M ++SKA S SS+P CS I GQ + P +R+ L K LLYG+ LL MPL+T
Sbjct: 1 MPVISKASSTTTNSSIPSCSR-----IGGQLCVWPGLRQLCLRKSLLYGVMWLLSMPLKT 55
Query: 60 LHGVGRMFGAGRFLCNMTSVSSSLQIELVPCLQDNYAYILHXXXXXXXXXXXPSEATPII 119
L G + F C+++++ SSL+IELVPC +DNYAY+LH PSEA P+I
Sbjct: 56 LRGARKTLKITHF-CSISNMPSSLKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVI 114
Query: 120 NALEKRNQNLTYILNTHHHYDHTGGNLELKAKYGAKVIGSAKDRDRIPGIDITLSEGDTW 179
AL ++N NLTYILNTHHH DH GGN ELK +YGAKVIGSA D+DRIPGIDI L + D W
Sbjct: 115 EALSRKNWNLTYILNTHHHDDHIGGNAELKERYGAKVIGSAVDKDRIPGIDILLKDSDKW 174
Query: 180 MFAGHQVLVMETPGHTSGHVCYHFPGSGAIFTGDTLFSLSCGKLFEGTPQQMYSSLQKII 239
MFAGH+V +++TPGHT GH+ ++FPGS IFTGD ++SLSCG L EGTP+QM SSLQKI+
Sbjct: 175 MFAGHEVRILDTPGHTQGHISFYFPGSATIFTGDLIYSLSCGTLSEGTPEQMLSSLQKIV 234
Query: 240 ALPDETRVYCGHEYTLSNSKFALSIEPGNKDLQEYAANAADLRKRNTPTVPTTIGREKQC 299
+LPD+T +YCG E T N KFALS+EP N+ LQ YA A LR + P++PTT+ EK C
Sbjct: 235 SLPDDTNIYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLRSQGLPSIPTTVKVEKAC 294
Query: 300 NPFLRTSSPEIKNTLSIPDHFDDARVLEVVRRAKDNF 336
NPFLR SS +I+ +LSIPD +A L ++RA+D F
Sbjct: 295 NPFLRISSKDIRKSLSIPDSATEAEALRRIQRARDRF 331
>AT3G10850.1 | chr3:3397756-3399522 REVERSE LENGTH=259
Length = 258
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 83 LQIELVPCLQDNYAYILHXXXXXXXXXXXPSEATPIINALEKRNQNLTYILNTHHHYDHT 142
++I VPCLQDNY+Y++ P + +I + EK + ++L THHH+DH
Sbjct: 1 MKIFHVPCLQDNYSYLIIDESTGDAAVVDPVDPEKVIASAEKHQAKIKFVLTTHHHWDHA 60
Query: 143 GGNLELKAKY-GAKVIGSAKDRDRIPGIDITLSEGDTWMFAGH-QVLVMETPGHTSGHVC 200
GGN ++K KV G + D++ G + GD +L + TP HT GH+
Sbjct: 61 GGNEKIKQLVPDIKVYGGS--LDKVKGCTDAVDNGDKLTLGQDINILALHTPCHTKGHIS 118
Query: 201 YHFPGSG----AIFTGDTLFSLSCGKLFEGTPQQMYSSL-QKIIALPDETRVYCGHEYTL 255
Y+ G A+FTGDTLF CGK FEGT +QMY SL + ALP T+VYCGHEYT+
Sbjct: 119 YYVNGKEGENPAVFTGDTLFVAGCGKFFEGTAEQMYQSLCVTLAALPKPTQVYCGHEYTV 178
Query: 256 SNSKFALSIEPGNKDLQEYAANAADLRKRNTPTVPTTIGREKQCNPFLRTSSPEIKNTLS 315
N +FAL++EP N +Q+ A A R+ + PT+P+T+ E + NPF+R PEI+ L
Sbjct: 179 KNLEFALTVEPNNGKIQQKLAWARQQRQADLPTIPSTLEEELETNPFMRVDKPEIQEKLG 238
Query: 316 IPDHFDDARVLEVVRRAKDNF 336
D R VR KD +
Sbjct: 239 CKSPIDTMR---EVRNKKDQW 256
>AT1G53580.1 | chr1:19991542-19993250 REVERSE LENGTH=295
Length = 294
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 119 INALEKRNQNLTYILNTHHHYDHTGGNLELKAKY-GAKVIGSAKDRDRIPGIDITLSEGD 177
+ +++ L Y +NTH H DH G LK K G K + S + D+ L GD
Sbjct: 93 LKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGSK---ADLFLEPGD 149
Query: 178 TWMFAGHQVLVMETPGHTSGHVCYHFPGSGA-------IFTGDTLFSLSCGK--LFEGTP 228
+ V TPGHT+G V Y G GA FTGD + CG+ EG+
Sbjct: 150 KVSIGDIYLEVRATPGHTAGCVTY-VTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSS 208
Query: 229 QQMYSSLQ-KIIALPDETRVYCGHEY 253
Q+Y S+ +I LP +T +Y H+Y
Sbjct: 209 DQLYESVHSQIFTLPKDTLIYPAHDY 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,307,411
Number of extensions: 303255
Number of successful extensions: 643
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 5
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)