BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514600 Os09g0514600|J075032G03
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07480.1  | chr3:2389026-2389505 FORWARD LENGTH=160            193   4e-50

>AT3G07480.1 | chr3:2389026-2389505 FORWARD LENGTH=160
          Length = 159

 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 108/120 (90%)

Query: 39  KVADRIVRLLAIDPDGARREVVGLSGQTVLRALANAGLIEPESHRLEEIDACSAECEVHI 98
           KV+DRIV+L AIDPDG +++++GLSGQT+LRAL + GLI+P SHRL++I+ACSAECEV I
Sbjct: 40  KVSDRIVKLSAIDPDGYKQDIIGLSGQTLLRALTHTGLIDPASHRLDDIEACSAECEVQI 99

Query: 99  AQEWLDKLPPPSYEERYVLTRASRNRELNKHARLGCQVVLTPELQGMVVAVPEPKPWDIP 158
           A+EWL+KLPP +Y+E YVL R+SR+R LNKH+RLGCQVVLT ELQGMVVAVPE KPWDIP
Sbjct: 100 AEEWLEKLPPRTYDEEYVLKRSSRSRILNKHSRLGCQVVLTQELQGMVVAVPEAKPWDIP 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,801,516
Number of extensions: 100419
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)