BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514100 Os09g0514100|AK103415
         (487 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48440.1  | chr5:19629932-19632588 REVERSE LENGTH=460          407   e-114

>AT5G48440.1 | chr5:19629932-19632588 REVERSE LENGTH=460
          Length = 459

 Score =  407 bits (1046), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/425 (51%), Positives = 282/425 (66%), Gaps = 11/425 (2%)

Query: 61  ASASHHDVVVVGAGIIGLSIARHLLLHTPLSVAVADAAVPCTGATGAGQGYLWMSHRTPG 120
           AS S  DVVVVG GIIGL+IAR  L  + LSVAV D AVPC+GATGAGQGY+WM+H+ PG
Sbjct: 40  ASRSSFDVVVVGGGIIGLTIARQFLTGSDLSVAVVDKAVPCSGATGAGQGYIWMTHKKPG 99

Query: 121 SDTWELAVRSKQLWXXXXXXXXXXXXXXXXXXXXWMRTGSLLVGRTSEEMATLEERTKAL 180
           SD W+L +RS +LW                    W +TGSLL+GRT+EE   L+++   L
Sbjct: 100 SDVWDLTLRSHELW-HKLAESLTDDGLDPEELLGWKKTGSLLIGRTTEECVALKQKVHEL 158

Query: 181 SQAGIRAECLSAASLHALEPELYVGHDGGAMFLPEDCQIDAFQAVSLIEKTNGSYSSEGR 240
           S+AG+R E LS+A L   EP + V  + GA FLP+D Q+DA +AV+ IEK N ++++ GR
Sbjct: 159 SEAGLRTEYLSSAELLLKEPAILVNDNTGAAFLPDDSQLDAHRAVAYIEKGNRAFATAGR 218

Query: 241 YMEIYNDPAMSLVRSE-TTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFL-EPNPT 298
           Y E YN+P   L+RS+  +  V GV+T K  LYG+KA ++A+G W+ +L+   L + N  
Sbjct: 219 YAEFYNEPVTGLIRSDGDSKVVAGVKTLKRNLYGKKATIVAAGCWSGSLMHELLKDCNIP 278

Query: 299 LDIPVMPRKGHXXXXXXXXXXXXNHGLMELGYVGHQVAKXXXXXXXXXXXEDEHGALSIS 358
           LD+PV PRKGH            NHG+ME GY  HQ A             DE   LSIS
Sbjct: 279 LDVPVKPRKGHLLVVENFDSFHLNHGIMEAGYSNHQSASVSGLDV------DER-MLSIS 331

Query: 359 MTATMNTKGNLILGSSREFKGFSREVDMSILKCIWDRAAEFFPTLKNVHL-DIDENTEIR 417
           MTATM+T GNL+LGSSREF GF  E D  I++CIW+RAAEFFP L+++ L D   N ++R
Sbjct: 332 MTATMDTSGNLVLGSSREFVGFDTEADEFIIRCIWERAAEFFPKLRDISLEDFIRNRKVR 391

Query: 418 IGHRPFMPDGKPVIGSVPDLPNVLIATGHEGSGLALALGTAEMVTDMILGNPGKVDFSPF 477
           +G RP+MPDGKPVIGSVP L N+ +A GHEG GL++AL TAEMVTDM+LG P +VD S F
Sbjct: 392 VGLRPYMPDGKPVIGSVPGLQNMYLAAGHEGGGLSMALATAEMVTDMVLGKPSQVDTSTF 451

Query: 478 SIKDR 482
            +K R
Sbjct: 452 GVKGR 456



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,114,992
Number of extensions: 357632
Number of successful extensions: 891
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 385
Effective length of database: 8,310,137
Effective search space: 3199402745
Effective search space used: 3199402745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)