BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0513200 Os09g0513200|Os09g0513200
(367 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59340.1 | chr3:21928971-21931030 REVERSE LENGTH=334 372 e-103
AT3G59310.2 | chr3:21922316-21924313 REVERSE LENGTH=364 367 e-102
AT3G59320.1 | chr3:21924705-21926840 REVERSE LENGTH=340 333 9e-92
AT3G59330.1 | chr3:21926984-21928332 REVERSE LENGTH=249 226 1e-59
AT3G07080.1 | chr3:2241360-2242934 FORWARD LENGTH=439 50 2e-06
>AT3G59340.1 | chr3:21928971-21931030 REVERSE LENGTH=334
Length = 333
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/289 (59%), Positives = 226/289 (78%), Gaps = 5/289 (1%)
Query: 11 REVFVGLALGQFVSLLITSTGFSSSELARRGVNAPTSQSLLNYVLLALVYGGILIYRRQH 70
++ +GL LGQ +SLL TS F+SSELAR+G+NAPTSQ+ L+Y LLA+VYGGI++YRR
Sbjct: 14 KKTLIGLGLGQILSLLCTSNAFTSSELARKGINAPTSQTFLSYTLLAVVYGGIMLYRRPT 73
Query: 71 LTIKWYYFLILGIVDVEANYIVVKAYQYTSLTSVMLIDCWAIPCVILLTWVFLKTKYGLR 130
+ KWY++ +L +VDVE N++VVKA QYTS+TS+ML+DCWAIPCV++LTW+FLKTKY L
Sbjct: 74 IKGKWYHYFLLALVDVEGNFLVVKANQYTSITSIMLLDCWAIPCVLVLTWMFLKTKYRLM 133
Query: 131 KFIGVVICVAGIILVVFSDVHASDRAKGPNPLKGDLFVIAGAMLYAVSNVTEEYFVKKSS 190
K GV IC+AG+++V+FSDVHA RA G NP+KGD V+AGA LYAVSN TEE+ VK +
Sbjct: 134 KISGVFICIAGVVMVLFSDVHAGSRAGGSNPVKGDFLVLAGATLYAVSNTTEEFLVKNAD 193
Query: 191 RIEVMAMLGVFGAVISEAYLNDKNFGQPNGM-----LILPFIGFAVAMFLFYSTVPIILK 245
+E+M +G+FGA+IS + G+ + + PF+ FA+ MFLFYS +PI+L+
Sbjct: 194 TVELMTFMGLFGAIISAIQVAIFEQGELKAIHWSADAVFPFLRFAITMFLFYSLLPILLR 253
Query: 246 ICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVAFAGTAAGLVIYS 294
G+TM LSLLTSDMWAVLIRIFAYHEKVDW+Y++AFA TA GL+IYS
Sbjct: 254 TNGSTMFTLSLLTSDMWAVLIRIFAYHEKVDWLYYLAFATTAIGLIIYS 302
>AT3G59310.2 | chr3:21922316-21924313 REVERSE LENGTH=364
Length = 363
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 223/340 (65%), Gaps = 42/340 (12%)
Query: 28 TSTGFSSSELARRGVNAPTSQSLLNYVLLALVYGGILIYRRQHLTIKWYYFLILGIVDVE 87
TS GF+SSELAR+G+N PTSQ LNYVLLA+VYG I++YRR + KWYY+ +L VDVE
Sbjct: 28 TSNGFTSSELARKGINVPTSQCFLNYVLLAIVYGSIMLYRRSDIKAKWYYYFLLAFVDVE 87
Query: 88 ANYIVVKAYQYTSLTSVMLIDCWAIPCVILLTWVFLKTKYGLRKFIGVVICVAGIILVVF 147
AN++VVKAYQYTSLTSVML+DCWAIPCV++LTW +LKTKY L K GV IC+ G+ +VVF
Sbjct: 88 ANFLVVKAYQYTSLTSVMLLDCWAIPCVLVLTWFYLKTKYRLMKISGVFICIVGVFMVVF 147
Query: 148 SDVHASDRAKGPNPLKGDLFVIAGAMLYAVSNVTEEYFVKKSSRIEVMAMLGVFGAVISE 207
SDVHA DRA G NP+KGD V+AGA LYAVSN +EE+ VK + +E+M LG FGA+IS
Sbjct: 148 SDVHAGDRAGGSNPVKGDFLVLAGATLYAVSNTSEEFLVKNADTVELMTFLGFFGAIISA 207
Query: 208 ----------------------------AYLNDKNFGQPNGML----------ILPFIGF 229
+ L N Q +L + PF+ F
Sbjct: 208 IQVSILERDELKAIHWSTGAVGFLAMAISILTSAN--QRRHILVYLLHFSRFQVFPFLRF 265
Query: 230 AVAMFLFYSTVPIILKICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVAFAGTAAG 289
+ MFLFY VP++LK GATM NLSLLTSDMWAVLIR F YHEKVDW+YF+AFA TA G
Sbjct: 266 TLTMFLFYPLVPVLLKTNGATMFNLSLLTSDMWAVLIRTFGYHEKVDWLYFLAFATTATG 325
Query: 290 LVIYSYKGSKVAEETAQVAGATDEEAATRVAGAGDDEPAS 329
L+IYS K E + G DE A R DDEP +
Sbjct: 326 LIIYSMKEKDQEEHRFEEVG--DEAAMQRKLLGEDDEPGT 363
>AT3G59320.1 | chr3:21924705-21926840 REVERSE LENGTH=340
Length = 339
Score = 333 bits (854), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 228/298 (76%), Gaps = 5/298 (1%)
Query: 11 REVFVGLALGQFVSLLITSTGFSSSELARRGVNAPTSQSLLNYVLLALVYGGILIYRRQH 70
++ +GL LGQ +SLL T +SE+AR+G++APTSQ+ L YV LA+VYGGI++YRR
Sbjct: 12 KKTLIGLGLGQIISLLSTLIASIASEIARKGISAPTSQTFLGYVSLAIVYGGIMLYRRSA 71
Query: 71 LTIKWYYFLILGIVDVEANYIVVKAYQYTSLTSVMLIDCWAIPCVILLTWVFLKTKYGLR 130
+ +KWY++ +L +VDVEAN++VVKA+Q TS+TS+ML+DCWAIPCV++LTWVFLKT+Y L
Sbjct: 72 IKVKWYHYFLLAVVDVEANFLVVKAFQNTSMTSIMLLDCWAIPCVLVLTWVFLKTRYRLM 131
Query: 131 KFIGVVICVAGIILVVFSDVHASDRAKGPNPLKGDLFVIAGAMLYAVSNVTEEYFVKKSS 190
K GVVIC+ G+++VVFSDVHA DRA G NP+KGD VIAGA LYAVSNVTEE+ VK +
Sbjct: 132 KISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVTEEFLVKNAD 191
Query: 191 RIEVMAMLGVFGAVISEAYLNDKNFG-----QPNGMLILPFIGFAVAMFLFYSTVPIILK 245
E+MA LG+FGA+I+ ++ G Q + IL +IG A+ +FLFY+ + I++K
Sbjct: 192 VTELMAFLGLFGAIIAAIQISIFERGAVRAIQWSTEAILLYIGGALGLFLFYTLITILIK 251
Query: 246 ICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVAFAGTAAGLVIYSYKGSKVAEE 303
G+TM NLSLLTSDMWA+LIR F YHEKVDW+YF+AFA TA GL+IYS K E+
Sbjct: 252 NNGSTMFNLSLLTSDMWAILIRTFGYHEKVDWLYFLAFATTATGLIIYSMKEKDEEEQ 309
>AT3G59330.1 | chr3:21926984-21928332 REVERSE LENGTH=249
Length = 248
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 132/165 (80%), Gaps = 11/165 (6%)
Query: 41 GVNAPTSQSLLNYVLLALVYGGILIYRRQHLTIKWYYFLILGIVDVEANYIVVKAYQYTS 100
G+NAPTSQS L YVLLA+VYG KWY++L+L VDVEAN++VVKAYQ TS
Sbjct: 68 GINAPTSQSFLGYVLLAIVYGA-----------KWYHYLLLAFVDVEANFLVVKAYQNTS 116
Query: 101 LTSVMLIDCWAIPCVILLTWVFLKTKYGLRKFIGVVICVAGIILVVFSDVHASDRAKGPN 160
+TSVML+DCWAIPCV++ TWVFLKTKY L K GVVIC G+++VVFSDVHA DRA G N
Sbjct: 117 MTSVMLLDCWAIPCVLVFTWVFLKTKYRLMKISGVVICNVGVVMVVFSDVHAGDRAGGSN 176
Query: 161 PLKGDLFVIAGAMLYAVSNVTEEYFVKKSSRIEVMAMLGVFGAVI 205
P+KGD VIAGA LYAVSNV++E+ VK + R+++M++LG+FGA+I
Sbjct: 177 PIKGDFLVIAGATLYAVSNVSQEFLVKNADRVQLMSLLGLFGAII 221
>AT3G07080.1 | chr3:2241360-2242934 FORWARD LENGTH=439
Length = 438
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 95 AYQYTSLTSVMLIDCWAIPCVILLTWVFLKTKYGLRKFIGVVICVAGIILVVFSDVHASD 154
+ +YT++TS ++ + L++ +FL K+ K V++C++G I+V D +
Sbjct: 184 SLKYTTVTSNTILSSASSLFTFLVSLIFLGEKFTWLKLFSVLLCMSGTIIVSMGDSESKS 243
Query: 155 RAKGPNPLKGDLFVIAGAMLYAV 177
A NPL GD+ + A LYAV
Sbjct: 244 NAVAKNPLLGDILSLVSAALYAV 266
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,016,407
Number of extensions: 271670
Number of successful extensions: 950
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 6
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)