BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0511500 Os09g0511500|AK060504
         (404 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47700.1  | chr2:19552506-19554351 REVERSE LENGTH=359          110   2e-24
AT3G05545.1  | chr3:1609436-1612133 FORWARD LENGTH=426            105   6e-23
AT2G15260.1  | chr2:6630528-6634008 FORWARD LENGTH=363             82   5e-16
AT4G13490.1  | chr4:7839137-7840284 REVERSE LENGTH=227             77   2e-14

>AT2G47700.1 | chr2:19552506-19554351 REVERSE LENGTH=359
          Length = 358

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 71/126 (56%), Gaps = 9/126 (7%)

Query: 27  CSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYGN 86
           CSICL++V   DG   RS A+LQCGH+FHLDCIGSAFN KG MQCPNCRN+EKG WLY N
Sbjct: 38  CSICLESV-LDDGT--RSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCRNVEKGQWLYAN 94

Query: 87  ES-QPCSHSDTGDWLNGET---FDYP-FSFEFGWCPFNTPLTSVFGESESEPNPFLEYIG 141
            S +P       DW+  E      YP   +   WCPF     +     E EP     Y  
Sbjct: 95  GSTRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQAAASFEELEPAT-TTYHT 153

Query: 142 SLHGFH 147
             HG H
Sbjct: 154 EFHGHH 159



>AT3G05545.1 | chr3:1609436-1612133 FORWARD LENGTH=426
          Length = 425

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 80/137 (58%), Gaps = 12/137 (8%)

Query: 26  VCSICLDAVAC-GDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLY 84
            CSICL+ V   GD    R+ A LQC H+FHLDCIGSAFNAKGVMQCPNCR +EKG WLY
Sbjct: 36  ACSICLETVVKNGD----RAWANLQCDHQFHLDCIGSAFNAKGVMQCPNCRKVEKGQWLY 91

Query: 85  GNESQPCSHSDTGDWLNGE-TFDY----PFSFEFGWCPF-NTPLTSVFGESESEPNPFLE 138
            N  +     +  DW++ E  +D       SF   WCPF ++     F + E  P+ + +
Sbjct: 92  ANGCRSYPEFNVEDWVHEEDIYDIGAYSEMSFGVHWCPFGSSARLPSFEDGEFSPSSYHD 151

Query: 139 YIGSLHGFHHPMYAPSS 155
            +G   G++    AP++
Sbjct: 152 LLGQ-QGYYTEPAAPTA 167



>AT2G15260.1 | chr2:6630528-6634008 FORWARD LENGTH=363
          Length = 362

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 26  VCSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYG 85
           +CSIC  A+   + V  R+   L+C H+FHLDCIGSA+NAKG M+CPNCRNIE GHW + 
Sbjct: 122 LCSICRGALVNENDVQ-RTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFS 180

Query: 86  N 86
           +
Sbjct: 181 D 181



>AT4G13490.1 | chr4:7839137-7840284 REVERSE LENGTH=227
          Length = 226

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 27 CSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYG 85
          C++CL+ +A  +    R+  +L+C H+FHLDC+GS+FN K  M+CP CR IEKG WL+ 
Sbjct: 22 CAVCLEPLA--NDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWLFA 78



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,222,670
Number of extensions: 396992
Number of successful extensions: 1184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 4
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)