BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0506900 Os09g0506900|AK066669
         (176 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24900.1  | chr4:12814867-12817388 FORWARD LENGTH=422           95   1e-20

>AT4G24900.1 | chr4:12814867-12817388 FORWARD LENGTH=422
          Length = 421

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 72/129 (55%), Gaps = 9/129 (6%)

Query: 41  ANVHMGAPPPWLEASERDQENESL--SGYARPSSR-KGKSGKLNPKRVGXXXXXXXXXXX 97
            NVH GAPPPWL+A++ D  +  L  S  AR  ++  GK+ KLNP RVG           
Sbjct: 289 GNVHSGAPPPWLDANDGDFSSVQLNQSDVARFQAKVPGKNRKLNPNRVGAAWAERRKIEI 348

Query: 98  XXXXXGELVPETSDSSWLPNFGGVWQSGTRKESRKEFEKNHKPHEEKSNKLSLE-----M 152
                G +     D  WLPNFG VWQSGTRKESRKEFEK  K    K+  +S E     +
Sbjct: 349 EMEKSGHVTKSNIDPDWLPNFGRVWQSGTRKESRKEFEK-EKRKLVKTESISTESEPVKI 407

Query: 153 KPYISKRMR 161
           +PYISKR R
Sbjct: 408 QPYISKRAR 416



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,912,672
Number of extensions: 149314
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)