BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0506700 Os09g0506700|Os09g0506700
(504 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03360.1 | chr3:795218-796918 FORWARD LENGTH=482 58 1e-08
AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457 54 2e-07
AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466 54 3e-07
AT4G03220.1 | chr4:1417472-1419148 FORWARD LENGTH=499 49 5e-06
AT4G26350.1 | chr4:13326853-13328315 FORWARD LENGTH=432 49 6e-06
AT5G02930.1 | chr5:682577-684480 FORWARD LENGTH=470 49 7e-06
>AT3G03360.1 | chr3:795218-796918 FORWARD LENGTH=482
Length = 481
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 38 EGGKIMGYSGLNLPEDIWSHIHSLMPLRDAARAACVSRAFRSFWRYHPNLIFRIETPDLN 97
E G ++ LP+DI I S +P R A + + +SR +R W +L F + PD
Sbjct: 34 EAGDLIS----RLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRDRPDAP 89
Query: 98 FIKKVDCILKNHSGIGIKSLRF----ESGIFYNASTSYYLDSWLQIAVTPLIEELTLGIL 153
I + IL + + S R + T +DSW+ A++ +E L+L
Sbjct: 90 CINR---ILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL--- 143
Query: 154 SYNTNYFDSKYDDEYNFPCSLLSDGRGSSMRHLYL------SRCSFHPTINLELRNLTRL 207
Y D +D+Y+ P L + SS++ LYL S +P ++ +L L
Sbjct: 144 -----YLD---EDKYDIPEFLYIN---SSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNL 192
Query: 208 HLAFVHITGNELGCVLSNSYALERLELNYCYGIICVKIPCLLQRLSHLEVF-ECRM 262
L +I+ + +LS LE L L +C + + + RL LE+ CRM
Sbjct: 193 SLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDL-SKSPRLITLEITRRCRM 247
>AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457
Length = 456
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 38 EGGKIMGYSGLNLPEDIWSHIHSLMPLRDAARAACVSRAFRSFWRYHPNLIFRIETPDLN 97
+G + Y +P+DI HI S +P A R + +SR +R W ETP L+
Sbjct: 24 DGADFINY----MPDDILHHILSFIPTDLAMRTSVLSRRWRHVW---------CETPCLD 70
Query: 98 FIKK---VDCILKNHSGIGIKSLRFESGIFYNASTSYYLDSWLQIAVTPLIEELTLGILS 154
K ++ L +++ I S + + N++T +DSW++ A++ ++ L++ +
Sbjct: 71 ITLKHGAMNQTLTSYTAPIITSFKLVMDL--NSNTVPQVDSWIEFALSRNVQNLSVFVRD 128
Query: 155 YNTNYFDSKYDDEYNFPCSLLSDGRGSSMRHLYLSRCSFH--PTINLELRNLTRLHLAFV 212
+ Y Y FP SS++ L ++ F PT + ++L L L F
Sbjct: 129 FT-------YSKTYRFPDIFY---LSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFC 178
Query: 213 HITGNELGCVLSNSYALERLELNYC 237
I + +LS LE L L+ C
Sbjct: 179 QIPDESIHNILSGCPILESLTLDTC 203
>AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466
Length = 465
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 38 EGGKIMGYSGLNLPEDIWSHIHSLMPLRDAARAACVSRAFRSFWRYHPNLIFRIETPDLN 97
+G + Y +P+DI HI S +P A R + +SR +R W P L +++ + N
Sbjct: 25 DGADFINY----MPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETN 80
Query: 98 FIKKVDCILKNHSGIGIKSLRFESGIFYNASTSYYLDSWLQIAVTPLIEELTLGILSYNT 157
L +++ I S + + N +T +DSW++ A++ ++ L++ + +
Sbjct: 81 ------QTLTSYTAPIITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDFT- 131
Query: 158 NYFDSKYDDEYNFPCSLLSDGRGSSMRHLYLSRCSFH--PTINLELRNLTRLHLAFVHIT 215
Y Y FP SS++ L ++ F PT + ++L L L F I
Sbjct: 132 ------YTKTYRFPDIFYI---SSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIP 182
Query: 216 GNELGCVLSNSYALERLELNYC 237
+ +LS LE L L+ C
Sbjct: 183 DESMHNILSGCPILESLTLDTC 204
>AT4G03220.1 | chr4:1417472-1419148 FORWARD LENGTH=499
Length = 498
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 70/324 (21%)
Query: 49 NLPEDIWSHIHSLMPLRDAARAACVSRAFRSFWRYHPNLIF----RIETP---DLNFIKK 101
NLP+ + I L+PL+ AA+A+ +S+ +RS + P+L F ++ P N I K
Sbjct: 28 NLPDSLNHQILLLLPLKSAAQASLLSKRWRSLFLSLPDLDFTSINDLKNPKSFSSNSIYK 87
Query: 102 VDCILKNHSGIGIKSLRFESGIFYNASTSYYLDSWLQIAVTPLIEELTLGILSYNTNYFD 161
V + + ++SLRF + + + L+S +++AVT +++L + + +
Sbjct: 88 VLSLRSHRDSNNLRSLRFRVPVTFTS-----LNSLIRLAVTHQVQDLDIEVTT------- 135
Query: 162 SKYDDEYNFPCSLLSDGRGSSMRHLYLSRCSFH----PTINLE--LRNLTRLHLAFVHIT 215
D +NFP +++ ++R L L + P+ + + LT L L+ V I
Sbjct: 136 ---KDYFNFPRWIVT---SQNLRALTLKSANLGFRLPPSSSARGGFQKLTSLSLSRV-IL 188
Query: 216 GNELGCVLSNSYA------LERLELNYCYGIICVKIPC-LLQRLSHLEVFECRMLQVIEN 268
N+ C LS+ + LE+L L C+G+ +K+ C LLQ S + L+V N
Sbjct: 189 HNQ-PC-LSDFFTDPSFPLLEKLTLECCFGLKELKVSCRLLQEFSLKNSLQLEGLEVSGN 246
Query: 269 ----------------------SAPNLGSFHFGINHVQLLLGESLQMKSLSMCYPGA--- 303
+ PNL +F + N V S+ +C A
Sbjct: 247 KLQKLKVESCFYSYSEKSFVKINTPNLKTFLWNSNAV----TTSVHFLDKLVCLRKAFVK 302
Query: 304 VYYACAELPSNVPNLETLTIGSPH 327
V++ +L S + +L TL G H
Sbjct: 303 VFWHHQDLNSQIQSLFTLLSGLCH 326
>AT4G26350.1 | chr4:13326853-13328315 FORWARD LENGTH=432
Length = 431
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 51 PEDIWSHIHSLMPLRDAARAACVSRAFRSFWRYHPNLIFRIETPDLNFIKKV-DCILKNH 109
P+ + I S +P +D + +S+ + S WR+ P L + ++ F+K V +L+N+
Sbjct: 8 PDHLLLRILSFIPTKDVIVTSLLSKRWGSLWRWVPKLEYDFTRQNMRFVKFVYRSLLQNN 67
Query: 110 SGIGIKSLRFESGIFYNASTSYYLDSWLQIAVTPLIEELTLGILSYNTNYFDSKYDDEYN 169
+ + ++SL ++ I Y + + W+ IAV+ + EL + I + D+++
Sbjct: 68 APV-LESLHLKNIILYAECRTVDIGGWIDIAVSRRVRELEISI---------NCSDEKFR 117
Query: 170 FPCSLLSDG 178
P SL + G
Sbjct: 118 LPSSLYTCG 126
>AT5G02930.1 | chr5:682577-684480 FORWARD LENGTH=470
Length = 469
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 27/249 (10%)
Query: 10 MSVQQERRHIQARMAKRKGSVCLQLANSEGGKIMGYSGL-NLPEDIWSHIHSLMPLRDAA 68
M +Q R + M KR +V + + G + +LP+ + HI S +P A
Sbjct: 1 MRFKQPSRRDRPVMFKRSKNVSVDV---------GVDSISDLPDAVLQHIFSYIPTELAI 51
Query: 69 RAACVSRAFRSFWRYHPNLIFRIETPDLNFIKKVDCILKNHSGIGIKSLRFESGIFYNAS 128
R + +S+ +R W P+L F I K L +++ IKS + Y A
Sbjct: 52 RTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKT---LASYTASKIKSFHLCTRYSYEAD 108
Query: 129 TSYYLDSWLQIAVTPLIEELTLGILSYNTNYFDSKYDDEYNFPCSLLSDGRGSSMRHLYL 188
T ++++S ++ A++ +++L+L + Y +DD + SS++ + L
Sbjct: 109 T-HHVNSSIEFAMSHNVDDLSLAFRRCSPFY---NFDDCF---------YTNSSLKRVEL 155
Query: 189 SRCSFHPTINLELRNLTRLHLAFVHITGNELGCVLSNSYALERLELNYCYGIICVKIPCL 248
P + +L L L ++ +LS LE L L +C + + +
Sbjct: 156 RYVDLMPRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLKYLNLSKS 215
Query: 249 LQRLSHLEV 257
L RL+ LE+
Sbjct: 216 L-RLTRLEI 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,141,254
Number of extensions: 475693
Number of successful extensions: 1720
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1724
Number of HSP's successfully gapped: 7
Length of query: 504
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,282,721
Effective search space: 3321371121
Effective search space used: 3321371121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)