BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0500900 Os09g0500900|J100028C11
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 132 5e-32
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 130 2e-31
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 127 3e-30
AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403 123 4e-29
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 122 9e-29
AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405 97 4e-21
AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467 75 1e-14
AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399 71 2e-13
AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370 71 2e-13
AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256 59 8e-10
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 72/89 (80%)
Query: 47 HEKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGI 106
+ IHG+LNAVSWGIL P+GAI+ARY++ F SADPAWFYLHVSCQ Y +GVAGWATG+
Sbjct: 216 NRNIHGILNAVSWGILFPIGAIIARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATGL 275
Query: 107 NLGNMSNGITYTLHRNIGIIVFALGTLQV 135
LGN S GI ++ HRNIGI +F L T+Q+
Sbjct: 276 KLGNESEGIRFSAHRNIGIALFTLATIQM 304
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 71/86 (82%)
Query: 50 IHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLG 109
IHG+LNAVSWG+L P+GA++ARY++ F SADPAWFYLHVSCQ Y +GVAGWATG+ LG
Sbjct: 220 IHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLKLG 279
Query: 110 NMSNGITYTLHRNIGIIVFALGTLQV 135
+ S GI Y HRNIGI +F++ TLQ+
Sbjct: 280 SESKGIQYNTHRNIGICLFSIATLQM 305
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 47 HEKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGI 106
IHG+LN VSWGI++P+GAI+ARYLK +SADPAWFYLHV CQ Y +GVAGWATG+
Sbjct: 207 KRNIHGILNGVSWGIMMPIGAIIARYLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATGL 266
Query: 107 NLGNMSNGITYTLHRNIGIIVFALGTLQV 135
LGN S GI +T HR +GI +F L T+QV
Sbjct: 267 KLGNESAGIQFTFHRAVGIALFCLATIQV 295
>AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403
Length = 402
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGIN 107
IHG+LN VSWGI++P+GAI+ARYL+ +SADPAWFY+HV CQ Y +GVAGWATG+
Sbjct: 216 RNIHGILNGVSWGIMMPLGAIIARYLRVAKSADPAWFYIHVFCQASAYIIGVAGWATGLK 275
Query: 108 LGNMSNGITYTLHRNIGIIVFALGTLQV 135
LG S GI Y+ HR IGI +F+L T+QV
Sbjct: 276 LGGDSPGIQYSTHRAIGIALFSLATVQV 303
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%), Gaps = 2/88 (2%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGIN 107
HG+LNAVSWG+L+PMGA++ARY+K F ADP WFYLH++ Q+ GY +GVAGWATGI
Sbjct: 208 RNTHGVLNAVSWGVLMPMGAMMARYMKVF--ADPTWFYLHIAFQVSGYVIGVAGWATGIK 265
Query: 108 LGNMSNGITYTLHRNIGIIVFALGTLQV 135
LGN S G +Y+ HRN+GI +F TLQV
Sbjct: 266 LGNDSPGTSYSTHRNLGIALFTFATLQV 293
>AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405
Length = 404
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Query: 17 PSIHPSNRIE---FSPNNIAKTFKNQSHFNFFGHEKI-HGLLNAVSWGILLPMGAILARY 72
P+IHP+ + FS ++ F + + K+ HG++NA+SWG LLP GA+ ARY
Sbjct: 181 PTIHPTTSTDLSSFSTFDVTSGFATVNQNSGSRALKVTHGVVNAISWGFLLPAGAVTARY 240
Query: 73 LKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLHRNIGIIVF 128
L+ +S P WFY+H + QL G+ +G G++ GI LG+ S G+TY LHR++GI F
Sbjct: 241 LRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIVLGHNSPGVTYGLHRSLGIATF 296
>AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467
Length = 466
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVG-VAGWATGI 106
++IH ++NA+SWGIL+P+G + ARY+K + DP WFY+HV CQ GY G + G T I
Sbjct: 217 KQIHAIVNALSWGILMPIGVMAARYMKNYEVLDPTWFYIHVVCQTTGYFSGLIGGLGTAI 276
Query: 107 NLGNMSNGITYTLHRNI 123
+ + G+ TLH I
Sbjct: 277 YMARHT-GMRTTLHTVI 292
>AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399
Length = 398
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 51 HGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGN 110
HG++ + WG LLP+GAILARYL R DP W+YLH+ Q G+ G+A GI L N
Sbjct: 220 HGVMAILGWGFLLPVGAILARYL---RHKDPLWYYLHIGFQFTGFIFGLAAVILGIQLYN 276
Query: 111 MSNGITYTLHRNIGIIVFALGTLQV 135
HR IGI + L TLQV
Sbjct: 277 RIQP-DIPAHRGIGIFLLVLSTLQV 300
>AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370
Length = 369
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 14 PSHPSIHPSNRIEFSPNNIAKTFKNQSHFNFFGHEKI---HGLLNAVSWGILLPMGAILA 70
PS P + I +QS H K+ HGL+N WGIL+ +GAI+A
Sbjct: 173 PSSPDFRLREHRFVTTTTINYNTGSQSVVKVSPHSKLKKTHGLMNMFGWGILIIVGAIVA 232
Query: 71 RYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLHRNIGIIVFAL 130
R++K + DP WFY H++ Q G+ +G+ G G+ L N + H+ +GI + +
Sbjct: 233 RHMKQW---DPTWFYAHIALQTTGFLLGLTGVICGLVLENRLKANNVSKHKGLGITILVM 289
Query: 131 GTLQV 135
G LQ+
Sbjct: 290 GVLQM 294
>AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256
Length = 255
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYL 86
+ IHGL+NAV WGI +P+G + ARY++T++ DP WFY+
Sbjct: 214 KSIHGLVNAVCWGIFIPIGVMAARYMRTYKGLDPTWFYI 252
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,292,446
Number of extensions: 132165
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)