BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0494600 Os09g0494600|AK107667
(266 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240 202 1e-52
AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247 197 3e-51
AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247 178 3e-45
AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240 105 2e-23
AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249 96 2e-20
AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245 85 5e-17
>AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240
Length = 239
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 1 MEWRXXXXXXXXXXXXXXVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
MEWR V +YHV+LW +R PL T G N+ RR W S+ KDN+K
Sbjct: 1 MEWRECYLDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIKDNDK 60
Query: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXX 120
K +L VQ+LRN IMGSTL+ATT+IL C G+AAVLSSTY +KKPL+DAVFGA GE
Sbjct: 61 KNILAVQTLRNCIMGSTLMATTSILLCAGLAAVLSSTYAVKKPLNDAVFGARGEFMVALK 120
Query: 121 XXXXXXXXXXXXXXXXXXICFLNEASFLINTS-PTXXXXXXXXXXXXXXXXXXXPSTRDY 179
I F+N+ + LINT P + +Y
Sbjct: 121 YVTILTIFLFSFFSHSLSIRFINQVNILINTPFPPEELEDEMMM-----------TAEEY 169
Query: 180 MEEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKSHR 237
+ E LE+GF LN VGNR+F+A +PL+LWIFGP+L FL S+VM+P+LYNLD R
Sbjct: 170 VAELLERGFILNTVGNRLFYAALPLMLWIFGPVLVFLCSVVMVPLLYNLDFFFFGKER 227
>AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247
Length = 246
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 138/258 (53%), Gaps = 18/258 (6%)
Query: 1 MEWRXXXXXXXXXXXXXXVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
MEW + YH++LW VR P T G NS RR W ++ KDNEK
Sbjct: 1 MEWEKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEK 60
Query: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXX 120
K +L VQ+LRN IMG TL+ATT IL C G+AAVLSSTY+IKKPL+DAV+GAHG+
Sbjct: 61 KNILAVQTLRNTIMGGTLMATTCILLCAGLAAVLSSTYSIKKPLNDAVYGAHGDFTVALK 120
Query: 121 XXXXXXXXXXXXXXXXXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTRDYM 180
I F+N+ + LIN T +Y+
Sbjct: 121 YVTILTIFLFAFFSHSLSIRFINQVNILINAPQEPFSDDFGEIGSFV--------TPEYV 172
Query: 181 EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKSHRXXX 240
E LEK F LN VGNR+F+ G+PL+LWIFGP+L FLSS ++IP+LYNLD V + S++
Sbjct: 173 SELLEKAFLLNTVGNRLFYMGLPLMLWIFGPVLVFLSSALIIPVLYNLDFVFLLSNK--- 229
Query: 241 XXXXXXXXKSSVDKNGAA 258
K VD NG
Sbjct: 230 -------EKGKVDCNGGC 240
>AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247
Length = 246
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 135/242 (55%), Gaps = 21/242 (8%)
Query: 1 MEWRXXXXXXXXXXXXXXVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
MEW+ + + YH++L VR P T GINS RR+W +M KDN+K
Sbjct: 1 MEWKKWYLDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKDNQK 60
Query: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXX 120
+L VQ+LRN++MG+TL+ATT +L C G+AAVLSSTY+IKKPL+DAVFGAHG+
Sbjct: 61 TNILAVQTLRNIVMGATLMATTCVLLCAGLAAVLSSTYSIKKPLNDAVFGAHGDFAISIK 120
Query: 121 XXXXXXXXXXXXXXXXXXICFLNEASFLINT-----SPTXXXXXXXXXXXXXXXXXXXPS 175
I FLN+ + L+N +P+
Sbjct: 121 YLTILTIFIFSFFFHSLSIRFLNQVAILVNIPNLDPNPSGCVFL---------------- 164
Query: 176 TRDYMEEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKS 235
T +++ E EKG LN VGNR+F+AG L+LWIFGP+L F S LVM+ +L +LD V+ +
Sbjct: 165 TSEHVSEMFEKGIFLNTVGNRLFYAGFSLMLWIFGPILVFFSVLVMVLVLSHLDFVSRNN 224
Query: 236 HR 237
++
Sbjct: 225 NK 226
>AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240
Length = 239
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 7/214 (3%)
Query: 19 VPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTL 78
+ + YHV+LW + P RT+ GI+S+ R+ W + + ++K +L VQSLRN M + L
Sbjct: 18 IAVGYHVFLWNTFKHNPSRTSLGIDSSKRKSWFRDIKEGDDKTGMLAVQSLRNKKMVTIL 77
Query: 79 VATTAILFCTGIAAVLSSTYTIKKPLS---DAVFGAHGEXXXXXXXXXXXXXXXXXXXXX 135
AT AIL +AAV ++ + ++ D FG+
Sbjct: 78 TATIAILIFLSLAAVTNNAFKASHLITAADDIFFGSQNAKIFVLKYASASLLLAASFFFS 137
Query: 136 XXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTRDYMEEALEKGFTLNFVGN 195
+ +L +A FLIN S R+Y LE+GF + VGN
Sbjct: 138 SIALSYLMDAIFLINA----IAKKHEGDCDCAYDITGTSSFREYTRLVLERGFFMAMVGN 193
Query: 196 RIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLD 229
R+ +PLLLW+FGPL SSL ++ +LY D
Sbjct: 194 RVMCVSIPLLLWMFGPLPVLASSLGLVWVLYQFD 227
>AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249
Length = 248
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 6/208 (2%)
Query: 23 YHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATT 82
YH+WL + P T G+N+ RRLW +M +D+ K VL VQ+LRN IM STL+A+T
Sbjct: 21 YHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGVLAVQTLRNNIMASTLLAST 80
Query: 83 AILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXXXXXXXXXXXXXXXXXXXXICFL 142
AI+ C+ IA +++S + VFG + I +
Sbjct: 81 AIMLCSLIAVLMTSATGERSVW--FVFGDKSDRAFSLKFFAILVCFLVAFLLNVQSIRYY 138
Query: 143 NEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTRDYMEEALEKGFTLNFVGNRIFFAGV 202
+ AS LIN +DY+ + +G +G R F+
Sbjct: 139 SHASILINVPFKQLMAVSSGGRGNGSLMI----NQDYVAATVNRGSYFWSLGLRAFYFSS 194
Query: 203 PLLLWIFGPLLAFLSSLVMIPILYNLDV 230
PL LWIFGP+ F++ V++ LY LD+
Sbjct: 195 PLFLWIFGPIPMFITCCVLVCSLYFLDL 222
>AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245
Length = 244
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 92/217 (42%), Gaps = 28/217 (12%)
Query: 19 VPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTL 78
V +AYHVWL A+ P T +N+ +RR W SM + K L VQ++RN IM STL
Sbjct: 18 VMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPLKNGTLAVQTIRNNIMASTL 77
Query: 79 VATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXXXXXXXXXXXXXXXXXXXX 138
+ATTAI C+ I +S++ + K ++ ++G+
Sbjct: 78 LATTAITLCSIIGVFVSNSSSSKSTATNLIYGSKSPRLASFKNFAILICFLMAFLCNIQS 137
Query: 139 ICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTR------DYMEEALEKGFTLNF 192
I + SFL+ P +R +Y+ L +
Sbjct: 138 IRYYAHVSFLVTV----------------------PVSRGKREHCEYVSRNLNRASYFWS 175
Query: 193 VGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLD 229
+G R F+ PL LW FGP+ F+ +M ILY LD
Sbjct: 176 LGLRAFYFSFPLFLWTFGPIPMFVCCCMMSSILYFLD 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,680,170
Number of extensions: 102720
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 6
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)