BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0493600 Os09g0493600|AK065737
         (225 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12930.1  | chr3:4128465-4129616 FORWARD LENGTH=239            203   5e-53

>AT3G12930.1 | chr3:4128465-4129616 FORWARD LENGTH=239
          Length = 238

 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 115/152 (75%), Gaps = 2/152 (1%)

Query: 76  DDADNLLEDLLSKHGEVVYNXXXXXXXXXXXX--XECLSFAVSLAKVASEVKAADIRVLF 133
           +D D + +DL +K+G+VV+                E L+FAV LAKVAS+VKA DI+VLF
Sbjct: 84  EDTDEMFDDLFNKYGKVVFRSTDVKSPTAEVDDDAESLAFAVELAKVASDVKAGDIKVLF 143

Query: 134 VKPLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSIVASGDTKPNSWTLLDFGDVVV 193
           VKPLVYWTRFFII TAFS  QIDAI S+MRD+ EK++  VA+GD KPNSWTLLDFGDVV+
Sbjct: 144 VKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYGKVANGDVKPNSWTLLDFGDVVI 203

Query: 194 HIFLPQQRAFYNLEEFYGNATSIELPFEKQLQ 225
           H+FLP QR FYNLE+FYGNA  IELPFE Q Q
Sbjct: 204 HLFLPPQRTFYNLEDFYGNAMQIELPFEDQSQ 235



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,340,711
Number of extensions: 107427
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)