BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0487500 Os09g0487500|AK108131
         (117 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57785.1  | chr3:21404835-21405179 REVERSE LENGTH=115          142   2e-35
AT2G42310.1  | chr2:17625251-17625595 FORWARD LENGTH=115          139   2e-34

>AT3G57785.1 | chr3:21404835-21405179 REVERSE LENGTH=115
          Length = 114

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 35  WTTPGHEEQPKGYLFNRPPPPAGESRKWEDWELPCYVTSFLTVVILGVGLNAKPDLTLET 94
           W TPGHEE+PKGY  NR PPP G+SRKWEDWELPCY+TSFLT+VILGVGLNAKPDL++ET
Sbjct: 32  WATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNAKPDLSIET 91

Query: 95  WAHQKALERLQQQELAS 111
           WAHQKALERL+ ++LAS
Sbjct: 92  WAHQKALERLEMEKLAS 108



>AT2G42310.1 | chr2:17625251-17625595 FORWARD LENGTH=115
          Length = 114

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 70/78 (89%)

Query: 35  WTTPGHEEQPKGYLFNRPPPPAGESRKWEDWELPCYVTSFLTVVILGVGLNAKPDLTLET 94
           W TPGHEE+PKGY  NR PP  G+SRKWEDWELPCY+TSFLT+VILGVGLNAKPDL++ET
Sbjct: 32  WATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVGLNAKPDLSIET 91

Query: 95  WAHQKALERLQQQELASG 112
           WAHQKALERL+ ++LA+ 
Sbjct: 92  WAHQKALERLEMEKLATA 109



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,248,201
Number of extensions: 86958
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)