BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0486500 Os09g0486500|AK106128
(164 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161 122 9e-29
AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162 103 3e-23
AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171 98 2e-21
AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177 96 7e-21
AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169 95 2e-20
AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176 92 9e-20
AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164 85 1e-17
AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131 82 9e-17
AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174 82 2e-16
AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126 78 2e-15
>AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161
Length = 160
Score = 122 bits (306), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 1 MAQRDKKDQEPTELRAPEITLCANSC------GFPGNPATQNLCQNCFXXXXXXXXXXXX 54
MAQR +K E TE + E + G NPAT N+CQ CF
Sbjct: 1 MAQRTEK--EETEFKVLETLTTTTTTLCTNNCGVTANPATNNMCQKCFNASLVSAAAGVV 58
Query: 55 XXXXVLDKQPPRXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXKTSAVNRCSRCRKRVGL 114
+L + + VNRCS CRK+VGL
Sbjct: 59 ESGSILKRSA--------RSVNLRSSPAKVVIRPREIDAVKKRDQQIVNRCSGCRKKVGL 110
Query: 115 TGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVRF 164
TGFRCRCG LFC EHRYSDRH CSYDYK+A R+AIAR+NPVV+AAK+V+
Sbjct: 111 TGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMVKV 160
>AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162
Length = 161
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 21 LCANSCGFPGNPATQNLCQNCFXXXXXXXXXXXXXXXXVLDKQPPRXXXXXXXXXXXXXX 80
LC N+CGF G+ AT NLC NC+ V P
Sbjct: 15 LCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELEI 74
Query: 81 XXXXMXXXXXXXXXXXXKTSAV---NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGC 137
+ S NRC+ CRKRVGLTGF CRCG FCG HRY + HGC
Sbjct: 75 PTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGC 134
Query: 138 SYDYKSAARDAIARDNPVVRAAKIVRF 164
++D+KSA R+ IA+ NP+V AAK+ +
Sbjct: 135 TFDFKSAGREEIAKANPLVIAAKLQKI 161
>AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171
Length = 170
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 52/62 (83%)
Query: 103 NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIV 162
NRC+ CRKRVGLTGF+CRCG +FCG HRY + HGCSYD+KSA R+ IA+ NP+V+AAK+
Sbjct: 109 NRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQ 168
Query: 163 RF 164
+
Sbjct: 169 KI 170
>AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177
Length = 176
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 12 TELRAPEITLCANSCGFPGNPATQNLCQNCFXXXXXXXXXXXXXXXXV------------ 59
T+ +A E LC CGF G+P+ +LC C+ V
Sbjct: 12 TQSQASEPKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSL 71
Query: 60 LDKQPPRXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXKTSAVNRCSRCRKRVGLTGFRC 119
+PP + + NRC C K+VG+ GF+C
Sbjct: 72 FIAEPPAVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKC 131
Query: 120 RCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVRF 164
+CG FCGEHRY + H CS+D+K R IA+ NPVV+A KI RF
Sbjct: 132 KCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQRF 176
>AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169
Length = 168
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Query: 12 TELRAPEITLCANSCGFPGNPATQNLCQNCFXXXXXXXXXXXXXXXXVLD-------KQP 64
T E LC CGF G+P+ NLC C+ V K
Sbjct: 9 TSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQ 68
Query: 65 PRXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXKTSAVNRCSRCRKRVGLTGFRCRCGHL 124
P+ S RC C K+VG+TGF+CRCG
Sbjct: 69 PQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGST 128
Query: 125 FCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVRF 164
FCG HRY + H C +D+K AR+AIA+ NPVV+A K+ R
Sbjct: 129 FCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176
Length = 175
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 67/167 (40%), Gaps = 14/167 (8%)
Query: 12 TELRAPEITLCANSCGFPGNPATQNLCQNCFXXXXXXXXXXXXXXXXVLD---------- 61
T E LC N CGF G+P+ NLC C+ V +
Sbjct: 9 TSFPPTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSII 68
Query: 62 ----KQPPRXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXKTSAVNRCSRCRKRVGLTGF 117
K P NRC C K+VG+ GF
Sbjct: 69 APGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGF 128
Query: 118 RCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVRF 164
+C+CG FCG HRY ++H CS+D+K RDAIA+ NP+V+A K+ R
Sbjct: 129 KCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164
Length = 163
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 104 RCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVR 163
RC CR+RVG+TGFRCRCG +FCG HRY+++H CS+D+K +D IA+ NP+V+A K+ +
Sbjct: 103 RCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEK 162
Query: 164 F 164
Sbjct: 163 I 163
>AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131
Length = 130
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 104 RCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVR 163
RC C+++VG+ GF+CRCGH+FCG HRY + H C +DYK + R A+A P++RA K+ R
Sbjct: 70 RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129
Query: 164 F 164
F
Sbjct: 130 F 130
>AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174
Length = 173
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 21 LCANSCGFPGNPATQNLCQNC-------------FXXXXXXXXXXXXXXXXVLDKQPPRX 67
LC N+CGF G+ AT N+C C F
Sbjct: 17 LCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSNIIKETFTAALVDI 76
Query: 68 XXXXXXXXXXXXXXXXXMXXXXXXXXXXXXKTSAVNRCSRCRKRVGLTGFRCRCGHLFCG 127
K +RC+ C KRVGLTGF+CRCG LFCG
Sbjct: 77 ETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCG 136
Query: 128 EHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
HRY+D H CS++Y +AA++AIA+ NPVV+A K+
Sbjct: 137 THRYADVHDCSFNYHAAAQEAIAKANPVVKAEKL 170
>AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126
Length = 125
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 108 CRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKIVRF 164
C+K+VGL GF CRCGHLF HRY + H C DYKSAA D +A+ NPVV+ K+ R
Sbjct: 69 CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,771,473
Number of extensions: 76065
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 11
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)