BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0481600 Os09g0481600|AK108636
(506 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56220.1 | chr5:22754871-22757792 FORWARD LENGTH=974 619 e-177
AT4G23440.1 | chr4:12237765-12240659 FORWARD LENGTH=965 408 e-114
>AT5G56220.1 | chr5:22754871-22757792 FORWARD LENGTH=974
Length = 973
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/511 (60%), Positives = 385/511 (75%), Gaps = 11/511 (2%)
Query: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
MVLW+GGEARY RQN+LNLS LGLD+SA+AEK+RGR+RSF+EQE +AF+R+KRELFRD+
Sbjct: 469 MVLWVGGEARYFRQNLLNLSFSLGLDVSADAEKDRGRLRSFDEQEFEAFKRIKRELFRDM 528
Query: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
PYLLIIDN++ E+DWWEGKDL+D IPRNTG +HV++TTRLP VM + +QL L +A+
Sbjct: 529 PYLLIIDNLEIEKDWWEGKDLNDLIPRNTGGTHVLITTRLPKVMTFDTVQLSILPSSDAM 588
Query: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
+L++ + K+DYP EE+EVL+ FDE+LG LS+GLW+V SLLSEL I PS LFEAV+++ +
Sbjct: 589 VLLRGRRKKDYPVEEVEVLKLFDEKLGRLSYGLWVVGSLLSELAILPSALFEAVNKVQIE 648
Query: 181 DTMLA--LGANDESLWQNNLFLIKVLVFCFALMDRVKGGS--LALRMITAGSWLAPAPMS 236
+ + L NDE ++N F+ KVL F A++++ +G L+L+M+ G+W AP P+
Sbjct: 649 ERSASPFLNLNDEQYCKSNPFVAKVLAFSLAVLEQAEGNRNLLSLKMLLVGAWFAPVPIP 708
Query: 237 STLLATMASKLPTKANSIQLWGESLK-TALLCGTHCFLAPQAKKAEVESSLLLVKLGLAR 295
LLA A +PT N W + L T CG C L +++E +++ LLV+LGLAR
Sbjct: 709 VNLLAAAAKNMPTGGNRFSKWNKCLSHTFAWCG-GCGL---GRRSEEDAAFLLVRLGLAR 764
Query: 296 RTTHHPGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFK 355
T PG WIQFHPI F + R + A V GV + N + DH+WASAFLVFGFK
Sbjct: 765 LTNRQPGCWIQFHPITQTFARRRDYILAPKATVQGVRKIDNPLLNLDHLWASAFLVFGFK 824
Query: 356 SEPPVVQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRI 415
SEPP+VQL+ DMVL+IK+ ALPLAI AF TFSRC SALELLKVCTN+LE+ EKS S+I
Sbjct: 825 SEPPLVQLQAMDMVLYIKRTALPLAITAFTTFSRCNSALELLKVCTNVLEEVEKSFVSQI 884
Query: 416 QDLKQGPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCI 475
QD +QG LCWKKK TN DE++WQ+VTLLKA LLETRAKLL+RGG FDSGEELCRTCI
Sbjct: 885 QDWRQGSLCWKKK--TNKKVDEYVWQDVTLLKALLLETRAKLLLRGGHFDSGEELCRTCI 942
Query: 476 SIRTVMLGHDHSQTLAAQETLAKLVRYRSKI 506
SIRTVMLGH+H TLAAQETLAKLVR RSKI
Sbjct: 943 SIRTVMLGHNHDLTLAAQETLAKLVRMRSKI 973
>AT4G23440.1 | chr4:12237765-12240659 FORWARD LENGTH=965
Length = 964
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/508 (40%), Positives = 337/508 (66%), Gaps = 10/508 (1%)
Query: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
MVLWIGGE+RY+RQN LNL YL +DI E ++ R++SFEEQE A ++++EL R++
Sbjct: 457 MVLWIGGESRYIRQNYLNLYQYLEVDIGIENSSDKTRMKSFEEQEDAAVSKIRKELMRNI 516
Query: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
P+L++IDN+++E+DWW+ K + D +PR G +H++++TRL VMN+EP++L LS EA+
Sbjct: 517 PFLVVIDNLESEKDWWDSKLVMDLLPRFGGGTHILISTRLSQVMNMEPLKLSYLSGAEAM 576
Query: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
LM+ +K DYP E++ LR +++LG L+ GL +V ++LSEL I PS L + ++++ L
Sbjct: 577 SLMQGNVK-DYPVSEMDALRTIEDKLGRLTLGLAVVGAILSELPINPSRLLDTINRMPLR 635
Query: 181 DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGG-SLALRMITAGSWLAPAPMSSTL 239
+ + + +L + N FL+++ CF++ D G SLA RM+ A WLAPAP+ ++L
Sbjct: 636 E--MVCSGREGNLLRRNAFLLQLFEVCFSIFDHADGPRSLATRMVVASGWLAPAPVPASL 693
Query: 240 LATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTH 299
LA A KLP K + L+ A+ CG F + +K++ E++ +L++ +AR ++
Sbjct: 694 LALAAHKLPEKHRGPKRLWRRLRRAITCG---FTSSNSKRSGAEAASMLLRFNIARTSSI 750
Query: 300 HPGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISV-YSDHMWASAFLVFGFKSEP 358
GF IQ H ++ L+ + R + A+ + SR +V ++ +WA FL+FGF +E
Sbjct: 751 KLGF-IQIHELVKLYARNRVLVNENAPAMVQAVISRGSTVETAEQIWAVCFLLFGFSNES 809
Query: 359 PVVQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDL 418
P +QLK ++++ +K++ LPLAI+ F++FSRC +++ELL+VCTN LE A+++L + ++
Sbjct: 810 PTIQLKITELLILVKQVILPLAIRTFISFSRCTASVELLRVCTNALEAADQTLVTPVEKW 869
Query: 419 KQGPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIR 478
LCW + +QT++ + +W+E+ L +AT+LETRAKL++RGG F ++L R I IR
Sbjct: 870 LDKSLCW-RPVQTSAQLNPILWEELALARATVLETRAKLMLRGGQFGLADDLIRKAIFIR 928
Query: 479 TVMLGHDHSQTLAAQETLAKLVRYRSKI 506
T + G DH T++A+ETL+KL R S +
Sbjct: 929 TSISGEDHPGTVSARETLSKLTRLLSNV 956
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,229,346
Number of extensions: 404406
Number of successful extensions: 1109
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 2
Length of query: 506
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,282,721
Effective search space: 3337936563
Effective search space used: 3337936563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)