BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0472700 Os09g0472700|Os09g0472700
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30380.1  | chr4:14860486-14860994 FORWARD LENGTH=124          123   2e-29
AT2G18660.1  | chr2:8091032-8091644 REVERSE LENGTH=131            107   2e-24
AT2G45110.1  | chr2:18599575-18601237 FORWARD LENGTH=260           46   6e-06

>AT4G30380.1 | chr4:14860486-14860994 FORWARD LENGTH=124
          Length = 123

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 73/102 (71%), Gaps = 4/102 (3%)

Query: 26  GTATFYTPPYTPSACFGFQEQGTMIAAASDVFWNGGAACGKRYVVTCTGATNQGVPRPCT 85
           G ATFYT  YTP  C+   ++G MIAAASD  W+ G  CGK + V C+G  N  VP PCT
Sbjct: 24  GIATFYTS-YTP--CYRGTQEGVMIAAASDTLWDNGRVCGKMFTVKCSGPRN-AVPHPCT 79

Query: 86  GRSVTVKIVDHCPSGCQGTIDLSQEAFAIIANPDAGKIKIDY 127
           G+SV VKIVDHCPSGC  T+DLS+EAFA IANP AG I IDY
Sbjct: 80  GKSVKVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDY 121



>AT2G18660.1 | chr2:8091032-8091644 REVERSE LENGTH=131
          Length = 130

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 25  SGTATFYTPPYTPSACFGFQEQGTMIAAASDVFWNGGAACGKRYVVTCTGATNQGVPRPC 84
            G A +Y PPYT SAC+G Q + T++    +  W  G ACG+RY V C GAT     R C
Sbjct: 27  QGKAVYYDPPYTRSACYGTQRE-TLVVGVKNNLWQNGRACGRRYRVRCIGAT-YNFDRAC 84

Query: 85  TGRSVTVKIVDHCPSGCQGTIDLSQEAFAIIANPDAGKIKIDY 127
           TGR+V VK+VD C   C G ++LS++AF +IAN DAG I++ Y
Sbjct: 85  TGRTVDVKVVDFCREPCNGDLNLSRDAFRVIANTDAGNIRVVY 127



>AT2G45110.1 | chr2:18599575-18601237 FORWARD LENGTH=260
          Length = 259

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 49  MIAAASDVFWNGGAACGKRYVVTCTGATNQGVPRPCTGRSVTVKIVDHCPSG-CQGT--- 104
           M++A     +N G  CG  Y V C G         C+G  +TV I D CP G C      
Sbjct: 68  MVSAGGPSLFNNGKGCGTCYQVVCIGHP------ACSGSPITVTITDECPGGPCASEPVH 121

Query: 105 IDLSQEAFAIIANP-------DAGKIKIDYRQ 129
           IDLS +A   +A P        AG I+++Y++
Sbjct: 122 IDLSGKAMGALAKPGQADQLRSAGVIRVNYKR 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,514,064
Number of extensions: 89375
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)