BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0471000 Os09g0471000|AK103634
(226 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 172 1e-43
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 156 1e-38
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 152 1e-37
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 149 1e-36
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 145 1e-35
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 16/212 (7%)
Query: 3 DHQSKVQRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIXXXXXXXXXXXX 62
D + V+RL++ C VFS+G +P+ +I+ L+++LD M+ DVG+
Sbjct: 53 DGITAVRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGLTPTMPYFRPNSG 112
Query: 63 XXXXXXXXXXXRRFLSARAFTRITYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSK 122
+ AR+ ITY+H+H+CD FSIG+FC P +PLH+HP M V SK
Sbjct: 113 --------------VEARSSPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSK 158
Query: 123 LLYGSMRVKSYDWANAPPCSGPRKSGLARVVAVDEMREAPCKASVLFPRSGGNIHSLTAV 182
LL+G+M +KSYDW P K+ LA+ + VD APC AS+L+P GGN+H TA+
Sbjct: 159 LLFGTMHIKSYDWVVDAPMRD-SKTRLAK-LKVDSTFTAPCNASILYPEDGGNMHRFTAI 216
Query: 183 TPCALLDVLAPPYAEDLGRPSTYFSDIPIPSL 214
T CA+LDVL PPY GR TYF + P+ L
Sbjct: 217 TACAVLDVLGPPYCNPEGRHCTYFLEFPLDKL 248
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 19/207 (9%)
Query: 8 VQRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIXXXXXXXXXXXXXXXXX 67
VQ+L+D C VF+ G +P+ + I L+ +LD ++ DVG+
Sbjct: 47 VQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYF---------- 96
Query: 68 XXXXXXRRFLSARAFTRITYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYGS 127
R ++ R+ +TY+HI+ C FSI +FC P +PLH+HP+M V SKLL+G+
Sbjct: 97 ------RSTVTGRS-PLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGT 149
Query: 128 MRVKSYDWANAPPCSGPRKSGLARVVAVDEMREAPCKASVLFPRSGGNIHSLTAVTPCAL 187
M +KSYDW P P V VD APC S+L+P GGN+H TA T CA+
Sbjct: 150 MHIKSYDW--VPDSPQPSSDTRLAKVKVDSDFTAPCDTSILYPADGGNMHCFTAKTACAV 207
Query: 188 LDVLAPPYAEDLGRPSTYFSDIPIPSL 214
LDV+ PPY++ GR TY+ D P S
Sbjct: 208 LDVIGPPYSDPAGRHCTYYFDYPFSSF 234
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 18/216 (8%)
Query: 7 KVQRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIXXXXXXXXXXXXXXXX 66
KVQ LYD C F+ KA P I+ L +LD + ADVG+
Sbjct: 34 KVQELYDLCKETFTG--KAPSPASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVSGV 91
Query: 67 XXXXXXXRRFLSARAFTRITYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYG 126
R R IT++ IHECD F++ +FCFP + +PLHDHP+M V SK+LYG
Sbjct: 92 S------RFNRVGRWAQPITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYG 145
Query: 127 SMRVKSYDWANAPPCSGPRKSG--------LARVVAVDEMREAPCKASVLFPRSGGNIHS 178
S+ VK+YDW PPC + G LA++V+ D++ + L+P++GGN+H
Sbjct: 146 SLHVKAYDWVE-PPCIITQDKGVPGSLPARLAKLVS-DKVITPQSEIPALYPKTGGNLHC 203
Query: 179 LTAVTPCALLDVLAPPYAEDLGRPSTYFSDIPIPSL 214
TA+TPCA+LD+L+PPY E +GR +Y+ D P +
Sbjct: 204 FTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTF 239
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 117/211 (55%), Gaps = 15/211 (7%)
Query: 9 QRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIXXXXXXXXXXXXXXXXXX 68
QRLY+ C A FSS L+++R ++L+ ++ +DVGI
Sbjct: 6 QRLYNTCKASFSSDGPITEDALEKVR---NVLEKIKPSDVGIEQDAQLARSRSGPLN--- 59
Query: 69 XXXXXRRFLSARAFTRITYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYGSM 128
R S ++ I Y+H+HECD FSIG+FC P + +PLH+HP M VLSKL+YGSM
Sbjct: 60 -----ERNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSM 114
Query: 129 RVKSYDWAN---APPCSGPRKSGLARVVAVDEMREAPCKASVLFPRSGGNIHSLTAVTPC 185
VKSYDW P +++ A++V EM A + L+P+SGGNIH A+T C
Sbjct: 115 HVKSYDWLEPQLTEPEDPSQEARPAKLVKDTEMT-AQSPVTTLYPKSGGNIHCFKAITHC 173
Query: 186 ALLDVLAPPYAEDLGRPSTYFSDIPIPSLPG 216
A+LD+LAPPY+ + R TYF LPG
Sbjct: 174 AILDILAPPYSSEHDRHCTYFRKSRREDLPG 204
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 8 VQRLYDACDAVFSSGSKAGLPTLKQIRWLQDLLDGMEAADVGIXXXXXXXXXXXXXXXXX 67
+QRL++ C + S L ++R ++L+ ++ +DVG+
Sbjct: 5 IQRLFNTCKSSLSPNGPVSEEALDKVR---NVLEKIKPSDVGLEQEAQLVRNWPGPGN-- 59
Query: 68 XXXXXXRRFLSARAFTRITYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYGS 127
R + + I Y+ +HECD FSIG+FC P G+ +PLH+HP M VLSKL+YGS
Sbjct: 60 ------ERNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGS 113
Query: 128 MRVKSYDWA--NAPPCSGPRKSGLARVVAVDEMREAPCKASVLFPRSGGNIHSLTAVTPC 185
M VKSYDWA + P ++ A++V +M +P A+ L+P +GGNIH A+T C
Sbjct: 114 MHVKSYDWAEPDQSELDDPLQARPAKLVKDIDMT-SPSPATTLYPTTGGNIHCFKAITHC 172
Query: 186 ALLDVLAPPYAEDLGRPSTYFSDIPIPSLPG 216
A+ D+L+PPY+ GR YF P+ LPG
Sbjct: 173 AIFDILSPPYSSTHGRHCNYFRKSPMLDLPG 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,545,008
Number of extensions: 162684
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 5
Length of query: 226
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,502,049
Effective search space: 1113768419
Effective search space used: 1113768419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)