BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0460200 Os09g0460200|J043039O10
(74 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14160.1 | chr4:8167574-8173026 FORWARD LENGTH=774 93 3e-20
AT3G23660.2 | chr3:8513666-8517729 REVERSE LENGTH=792 92 4e-20
AT1G05520.1 | chr1:1631126-1635703 REVERSE LENGTH=784 91 2e-19
AT2G21630.1 | chr2:9250346-9253829 FORWARD LENGTH=762 86 3e-18
AT5G43670.1 | chr5:17539025-17541733 REVERSE LENGTH=795 54 2e-08
>AT4G14160.1 | chr4:8167574-8173026 FORWARD LENGTH=774
Length = 773
Score = 92.8 bits (229), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/55 (76%), Positives = 48/55 (87%)
Query: 10 IVSKSLLEPIRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDVFACAVDQV 64
I+SK L +P+RSHKDLDKD+AP Y KAVKFYD IAKQLV QGHVLD+FA A+DQV
Sbjct: 311 IISKDLSDPVRSHKDLDKDAAPYYKKAVKFYDSIAKQLVAQGHVLDLFASALDQV 365
>AT3G23660.2 | chr3:8513666-8517729 REVERSE LENGTH=792
Length = 791
Score = 92.4 bits (228), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/55 (78%), Positives = 48/55 (87%)
Query: 10 IVSKSLLEPIRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDVFACAVDQV 64
IVSK L +P+RSHKDLDKD+AP Y KAVKFYD IAKQLV QGHVLD+FA A+DQV
Sbjct: 304 IVSKDLSDPVRSHKDLDKDAAPYYKKAVKFYDSIAKQLVTQGHVLDLFASALDQV 358
>AT1G05520.1 | chr1:1631126-1635703 REVERSE LENGTH=784
Length = 783
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/55 (74%), Positives = 47/55 (85%)
Query: 10 IVSKSLLEPIRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDVFACAVDQV 64
IVSK L EP+RSHKDLDKD+AP Y KA KFYD +A QLV+QGHVLD+FA A+DQV
Sbjct: 321 IVSKDLSEPLRSHKDLDKDAAPFYKKAEKFYDALANQLVNQGHVLDLFASALDQV 375
>AT2G21630.1 | chr2:9250346-9253829 FORWARD LENGTH=762
Length = 761
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 10 IVSKSLLEPIRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDVFACAVDQV 64
IVS+ L +PIRSHKD+DKDSA Y KAV+FY+ +AKQLVHQGHVLDVFA +VDQV
Sbjct: 303 IVSRELSDPIRSHKDIDKDSAMYYHKAVEFYEMLAKQLVHQGHVLDVFASSVDQV 357
>AT5G43670.1 | chr5:17539025-17541733 REVERSE LENGTH=795
Length = 794
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 10 IVSKSLLEPIRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDVFACAVDQV 64
IV L IR+H+D+ YDK+ FY ++AK+L VLDVFAC++DQV
Sbjct: 337 IVDSDLSNSIRTHRDIITGHVSYYDKSCGFYKKLAKRLCDSSVVLDVFACSLDQV 391
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,438,658
Number of extensions: 45374
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 5
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)