BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0458800 Os09g0458800|009-148-H10
(105 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41100.1 | chr2:17138131-17139406 FORWARD LENGTH=325 49 5e-07
AT1G18210.1 | chr1:6268273-6268785 REVERSE LENGTH=171 48 1e-06
AT1G24620.1 | chr1:8723893-8724453 REVERSE LENGTH=187 47 1e-06
AT1G66400.1 | chr1:24770856-24771329 REVERSE LENGTH=158 47 2e-06
AT5G37770.1 | chr5:14999075-14999560 REVERSE LENGTH=162 45 6e-06
AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170 45 7e-06
AT5G37780.3 | chr5:15004769-15006117 REVERSE LENGTH=176 45 8e-06
AT1G66410.2 | chr1:24774431-24775785 REVERSE LENGTH=160 45 8e-06
>AT2G41100.1 | chr2:17138131-17139406 FORWARD LENGTH=325
Length = 324
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 30 KFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYIDDSE 86
+F+E R FD +GDG I+ +ELR MR++G T + + ++ ADADGDG I SE
Sbjct: 191 EFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSE 247
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 30 KFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYIDDSE 86
+++E R FD +GDG I++ EL MR++G + T + M+ AD DGDG ID E
Sbjct: 12 EYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPE 68
>AT1G18210.1 | chr1:6268273-6268785 REVERSE LENGTH=171
Length = 170
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 26 AVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYIDDS 85
A E+ K+ QFD++GDG+IS EL +A+G +T + R + D D DGYI+
Sbjct: 19 ANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLD 78
Query: 86 EIDGL 90
E L
Sbjct: 79 EFSTL 83
>AT1G24620.1 | chr1:8723893-8724453 REVERSE LENGTH=187
Length = 186
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 22 FNETAVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGY 81
++ V E K+ +D DG+G IS +EL +R++G + +CR+ + D DGDG
Sbjct: 102 MDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGT 161
Query: 82 IDDSEIDGLIEYWGRR 97
ID E ++ RR
Sbjct: 162 IDFEEFKIMMTMGSRR 177
>AT1G66400.1 | chr1:24770856-24771329 REVERSE LENGTH=158
Length = 157
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 23 NETAVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYI 82
N +A+R+ KE +D D +GRIS +EL M+ +G + + C+R ++ D+DGDG +
Sbjct: 84 NNSAIRD-LKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCV 142
Query: 83 DDSEIDGLIEYWG 95
D E ++ G
Sbjct: 143 DFEEFKKMMMING 155
>AT5G37770.1 | chr5:14999075-14999560 REVERSE LENGTH=162
Length = 161
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 31 FKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYIDDSEIDGL 90
KE +D DG+GRIS EL M+ +G + + C++ +S D DGDG ++ E +
Sbjct: 95 LKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDEFKKM 154
Query: 91 IEYWG 95
+ G
Sbjct: 155 MSNGG 159
>AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170
Length = 169
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 25 TAVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYID 83
T +++ KE FDTDG G I EL AMRA+G T + + ++ D DG G ID
Sbjct: 22 TQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAID 80
>AT5G37780.3 | chr5:15004769-15006117 REVERSE LENGTH=176
Length = 175
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 24 ETAVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYID 83
+T E+ KE R FD D +G IS ELR M +G + T + + AD DGDG I+
Sbjct: 105 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQIN 164
>AT1G66410.2 | chr1:24774431-24775785 REVERSE LENGTH=160
Length = 159
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 25 TAVREKFKEWIRQFDTDGDGRISRDELRRAMRAVGVRFTGIKCRRGMSHADADGDGYID 83
T E+ KE R FD D +G IS ELR M +G + T + + AD DGDG I+
Sbjct: 90 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQIN 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.144 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,516,900
Number of extensions: 103597
Number of successful extensions: 711
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 11
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)