BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0456700 Os09g0456700|AK108731
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67020.1 | chr5:26749962-26751146 FORWARD LENGTH=395 288 4e-78
AT3G50340.1 | chr3:18665333-18666544 REVERSE LENGTH=404 246 2e-65
AT2G22790.1 | chr2:9695932-9696909 FORWARD LENGTH=326 94 2e-19
>AT5G67020.1 | chr5:26749962-26751146 FORWARD LENGTH=395
Length = 394
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/407 (39%), Positives = 219/407 (53%), Gaps = 26/407 (6%)
Query: 1 MVDVDSRMXXXXXXXXXXXXXXXLSTRXXXXXXXXXXXXRHGLHSFDGVAAAVLSHLRKT 60
MVDVD RM LS R R+ L SF A V++HL+ +
Sbjct: 1 MVDVDRRMTGLTPAHAAGLRR--LSARAAAPSTPTI---RNSLQSFSPFADKVINHLKNS 55
Query: 61 GVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSGAGFPDWR---GRAWLRAAFDL 117
G+ + PGLSD EFARVEAE GFTFPPDLR +L+ GL GAGFPDWR R LRA DL
Sbjct: 56 GIKIQPGLSDTEFARVEAEFGFTFPPDLRVILSAGLSVGAGFPDWRSPGARLHLRAMIDL 115
Query: 118 PIAAASLQIAKGALWPRCWGRRPSDPDXXXXXXXXXXXXXPLLVPLFDRCYLPCRPCLAG 177
P+AA S QIAK +LW + WG +P DP+ PLL+P+FD CY+PC P LAG
Sbjct: 116 PVAAVSFQIAKNSLWCKSWGLKPPDPEKALRVARNALKRAPLLIPIFDHCYIPCNPSLAG 175
Query: 178 NPVFFITDDRVLCCGLDILHFFTRESSFQP-------LDVSSPSATPSSGICTPHTRRSL 230
NPVFFI + R+ CCG D+ FF RES+F+ L + S+G + +RRSL
Sbjct: 176 NPVFFIDETRIFCCGSDLSEFFERESAFRSSEFFPRILTKQRSVSEKSAGSSSNFSRRSL 235
Query: 231 DA--VCGGQALRWIEFWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVDN 288
D G RW+EFW WV+
Sbjct: 236 DLGRANGAGKSRWVEFWSDAAVDRCRRNSASTSSSSSSSPDLPKTETPK-------WVNQ 288
Query: 289 YLDKLGSVLKKGGWRDREVDEMVEVTASGLFDGEEXXXXXXXXXXXXXFLKTDRCSDSLR 348
Y++++GSVL++GGW + ++DE++ V+ASG F+G E LK R S+SLR
Sbjct: 289 YVNRIGSVLRRGGWSESDIDEIIHVSASGFFEG-EMVIIDNQTVLDVLLLKAGRISESLR 347
Query: 349 RAGWTSEDVSDAFGLDLRRRKEQPRPAVQIPPEIAAKVQRLAQAVAR 395
++GW+SE+VSDA G D R KE+ +P ++ P + + ++LA+ V++
Sbjct: 348 KSGWSSEEVSDALGFDFRPEKER-KPVKKLSPMLVEQFEKLAEWVSQ 393
>AT3G50340.1 | chr3:18665333-18666544 REVERSE LENGTH=404
Length = 403
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/372 (41%), Positives = 207/372 (55%), Gaps = 20/372 (5%)
Query: 40 RHGLHSFDGVAAAVLSHLRKTGVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSG 99
R+ L SF +A V+SHL + + V PGL+D+EFAR EAE F FPPDLRAVL GLP G
Sbjct: 35 RNSLVSFSSLADQVISHLHTSRIQVQPGLTDSEFARAEAEFAFAFPPDLRAVLTAGLPVG 94
Query: 100 AGFPDWR---GRAWLRAAFDLPIAAASLQIAKGALWPRCWGRRPSDPDXXXXXXXXXXXX 156
AGFPDWR R LRA DLPIAA S QIA+ LW + WG RPSDP+
Sbjct: 95 AGFPDWRSPGARLHLRAMIDLPIAAVSFQIARNTLWSKSWGLRPSDPEKALRVARNALKR 154
Query: 157 XPLLVPLFDRCYLPCRPCLAGNPVFFITDDRVLCCGLDILHFFTRESSFQPLDVSSPSAT 216
PL++P+FD CY+PC P LAGNPVF+I + R+ CCG D+ FF RES F+ D T
Sbjct: 155 APLMIPIFDHCYIPCNPSLAGNPVFYIDETRIFCCGSDLSDFFERESVFRGSDTCPVVLT 214
Query: 217 PSSGI-----------CTPHTRRSLDA--VCGGQALRWIEFWXXXXXXXXXXXXXXXXXX 263
+ + +R SLD+ V G RW+EFW
Sbjct: 215 KQRSVSEKSAGSSSSSSSNFSRMSLDSGRVHGSSTPRWVEFWSDAAVDRRRRNSASSMSS 274
Query: 264 XXXXXXXXXXXXXXXXXXXXLWVDNYLDKLGSVLKKGGWRDREVDEMVEVTASGLFDGEE 323
WVD+Y++++GSVL+ GGW + +VD++V V+ASG F+G E
Sbjct: 275 SHSSSPERYLDLPRSETPK--WVDDYVNRIGSVLRGGGWSESDVDDIVHVSASGFFEG-E 331
Query: 324 XXXXXXXXXXXXXFLKTDRCSDSLRRAGWTSEDVSDAFGLDLRRRKEQPRPAVQIPPEIA 383
LK R S+SLR+AGW+SE+VSDA G D R KE+ +P ++ PE+
Sbjct: 332 MVILDNQAVLDALLLKAGRFSESLRKAGWSSEEVSDALGFDFRPEKEK-KPVKKLSPELV 390
Query: 384 AKVQRLAQAVAR 395
++ +LA++V+R
Sbjct: 391 QRIGKLAESVSR 402
>AT2G22790.1 | chr2:9695932-9696909 FORWARD LENGTH=326
Length = 325
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 52 AVLSHLR-KTGVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSGAGFPDWRGRAW 110
+++H + +TG V PGL++ E + VE+ GF+FP DLR++L GLP G FP+WR +
Sbjct: 35 TIVNHFKSQTGNHVSPGLTNQEISAVESSHGFSFPLDLRSILQTGLPVGTNFPNWRTGS- 93
Query: 111 LRAAFDLPIAAASLQIAKGALWPRCWGRRPSDPDXXXXXXXXXXXXXPLLVPLFDRCYLP 170
R LP+ S + + W WG RP + P+LVP++ Y+P
Sbjct: 94 NRNNLLLPLLNLSQHVVRNGFWVDSWGIRPGNDAEALSLVKKLIEIAPVLVPVYGDFYVP 153
Query: 171 -CRPCLAGNPVFFITDDRVLCCGLDILHFF 199
P LAGNPVF I D V D++ F
Sbjct: 154 STTPNLAGNPVFQIDGDGVRELSCDVVGFL 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,949,002
Number of extensions: 253476
Number of successful extensions: 659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 5
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)