BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0452200 Os09g0452200|AK106042
(401 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21880.2 | chr1:7680689-7682526 FORWARD LENGTH=417 348 3e-96
AT1G77630.1 | chr1:29173726-29175387 FORWARD LENGTH=424 325 3e-89
AT2G17120.1 | chr2:7459156-7460648 FORWARD LENGTH=351 108 3e-24
AT2G23770.1 | chr2:10120242-10122080 REVERSE LENGTH=613 55 7e-08
AT3G01840.1 | chr3:296582-298634 REVERSE LENGTH=655 51 1e-06
>AT1G21880.2 | chr1:7680689-7682526 FORWARD LENGTH=417
Length = 416
Score = 348 bits (893), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/318 (52%), Positives = 226/318 (71%), Gaps = 4/318 (1%)
Query: 36 CPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCA 95
C ALL YTLY DLK++E+A+LF DP++IL AN+ID + PD + ILP+ L L++P+ C+
Sbjct: 40 CNALLGYTLYTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKLFLKIPITCS 99
Query: 96 CSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLF 155
C DGIR+ + Y RP D L S+A SVYGGL + + I ++N + + +D GT+L
Sbjct: 100 CVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSV---NDPSLLDVGTSLV 156
Query: 156 VPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAGDI 215
+PL CACF G DN LPAVYL+YV + DT+ +A+RY TT TDLM+VN M P++++GDI
Sbjct: 157 IPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDI 216
Query: 216 IVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADSTCS 275
+ VPL AC S FP + +D+GL V NG+YA+ A CVQCSC G+ +L+C PA LA S CS
Sbjct: 217 LAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYCEPASLAVS-CS 275
Query: 276 SMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPPLI 335
SMQC NS++MLGN T+ TS+GC+VT+C Y G NGTILT LT +L+P+CPGP Q+ PL+
Sbjct: 276 SMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTMLTRSLQPRCPGPQQFAPLL 335
Query: 336 PPPTSSFFETYLGPSPTP 353
PP + + P+P+P
Sbjct: 336 APPDTVPRDVMYAPAPSP 353
>AT1G77630.1 | chr1:29173726-29175387 FORWARD LENGTH=424
Length = 423
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 6/304 (1%)
Query: 36 CPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCA 95
C +LL YTLY DLK+ E+A+LF DP+++L +NSID + PD + +LPA L L++P+ C+
Sbjct: 37 CNSLLGYTLYTDLKVTEVASLFQVDPVSMLLSNSIDISYPDVENHVLPAKLFLKIPITCS 96
Query: 96 CSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAV-DAGTTL 154
C DGIR+ + Y R DTL S+A SVYGGL +P+ I +N ++ D +V D GT L
Sbjct: 97 CVDGIRKSLSTHYKTRTSDTLGSIADSVYGGLVSPEQIQVAN----SETDLSVLDVGTKL 152
Query: 155 FVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAGD 214
+PL CACF G D LPA+YL+YV DT+A +A+R+ T+ TDL +VN M P++ GD
Sbjct: 153 VIPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGD 212
Query: 215 IIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADSTC 274
I+ VPL AC+S+FP + DYGL + NG+YA+TA CVQCSC G+ ++C PA ++ S C
Sbjct: 213 ILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCSCVLGSRSMYCEPASISVS-C 271
Query: 275 SSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPPL 334
SSM+C NS+ MLGN T +SSGC +T+CSY GF +GTILTTL+ +L+P+CPGP Q PL
Sbjct: 272 SSMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGFASGTILTTLSMSLQPRCPGPQQLAPL 331
Query: 335 IPPP 338
I PP
Sbjct: 332 IAPP 335
>AT2G17120.1 | chr2:7459156-7460648 FORWARD LENGTH=351
Length = 350
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 146/311 (46%), Gaps = 34/311 (10%)
Query: 34 TACPALLSYTLYADLKLAELAALFSADPL-AILAANSIDFAVPDPADRILPAGLPLRVPV 92
+ C +L+ Y+ L + LF+ L +IL AN++ R+ P + +RVP+
Sbjct: 36 STCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLNTSRD-QRVNPNQV-VRVPI 93
Query: 93 PCACSDGIRRVTT-VRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPD-AAVDA 150
C+CS+G + Y + D L+ VA+ ++GGL T + IS+ N I PD ++
Sbjct: 94 HCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKI----PDPNKIEI 149
Query: 151 GTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDM-ATPE 209
G ++PL C+C NG V+ +V G ++ +A ++ T T L +N + +
Sbjct: 150 GQKFWIPLPCSC--DKLNGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQ 207
Query: 210 LAAGDIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGP-GNLDLFCVPA- 267
L A + VPL AC+SS + D L ++N +Y TAN CV+C+C N L C +
Sbjct: 208 LLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQSSS 267
Query: 268 ---PLADSTCSSM-QCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKP 323
P TC QC + L+ +S C Y G+ N TI TT + P
Sbjct: 268 EIKPSNWQTCPPFSQCDGA---------LLNASCRQPRDCVYAGYSNQTIFTTAS----P 314
Query: 324 QCP---GPHQY 331
CP GP Y
Sbjct: 315 ACPDSAGPDNY 325
>AT2G23770.1 | chr2:10120242-10122080 REVERSE LENGTH=613
Length = 612
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 53 LAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCACSDGIRRVTTVRYVARP 112
+++LFS DP + +S++ A P + P+G + +P+ C+C+ G + + Y +P
Sbjct: 73 ISSLFSVDPSLV---SSLNDASPSTS---FPSGQQVIIPLTCSCT-GDDSQSNITYTIQP 125
Query: 113 GDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHCAC--FGGVDNGL 170
D+ ++A+ GL+T ++ N + ++ G + VP+ CAC ++
Sbjct: 126 NDSYFAIANDTLQGLSTCQALAKQNNV----SSQSLFPGMRIVVPIRCACPTAKQINEDG 181
Query: 171 PAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMA--TPELAAGDIIVVPL---PACTS 225
++Y DT+A ++ R+ + + N+M+ E+ I++PL PA T+
Sbjct: 182 VKYLMSYTVVFEDTIAIISDRFGVETSKTLKANEMSFENSEVFPFTTILIPLVNPPANTN 241
Query: 226 SF 227
S
Sbjct: 242 SL 243
>AT3G01840.1 | chr3:296582-298634 REVERSE LENGTH=655
Length = 654
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 76 DPADRILPAGLPLRVPVPCACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISD 135
D D +P G L +P+ C C+ I + ++ + GDT SV+ S+ GLTT I +
Sbjct: 82 DADDEYVPKGQLLLIPIECRCNGSIYEASLIKNCVK-GDTFRSVSQSL-QGLTTCLSIRE 139
Query: 136 SNGILGAKPDAAVDA---GTTLFVPLHCAC-FGGVDNGLPAVYLTYVAGKGDTVAAVAQR 191
N P + D L + + C+C GV N + +TY G D+V+++A R
Sbjct: 140 KN------PHISEDKLGDNIKLRLAIRCSCPQEGVSNA--SFLVTYPVGVRDSVSSLAVR 191
Query: 192 YRTTATDLMSVNDMA 206
+ TT ++S N+ +
Sbjct: 192 FNTTEDAIVSANNKS 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,915,022
Number of extensions: 336921
Number of successful extensions: 1189
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1180
Number of HSP's successfully gapped: 6
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)