BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0443000 Os09g0443000|Os09g0443000
         (554 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13570.1  | chr1:4642528-4643930 REVERSE LENGTH=417             82   7e-16

>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
          Length = 416

 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 104 WILVLARRGVESLDLASPIHNHLAVHSSVFSCDRLAYLNLFACDIPPLPPGFAGFPNLRS 163
           W+L L+R G++ L L         V + +F+C +L  L L  C+  P P  F GF  L+S
Sbjct: 102 WLLFLSRNGIKELVLKLG-EGEFRVPACLFNCLKLTCLELCHCEFDP-PQYFKGFSYLKS 159

Query: 164 LTLDHVWLRAGGEYQLEEIIENSPLLEMLVLSGIFIDGDDIINWVIRAPNLQHLTICSPN 223
           L L  + +       +E +I   PLLE L LS       D +   I APNL +L +    
Sbjct: 160 LNLHQILVAPE---VIESLISGCPLLEFLSLSYF-----DSLVLSISAPNLMYLYLDGEF 211

Query: 224 DYGWNLLDLPRLRSAVIDLWDYLGGRDFAE--------FLGKLLHVRKL--HLFVSYQPS 273
              + L + P+L +  + ++ +    DF +        FLG +  + KL  +++ +   S
Sbjct: 212 KDIF-LENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLS 270

Query: 274 NGAKILETLPCTFDXXXXXXXXXXYMDFCELPAILTIFCLLRNAPNLEKLKIMITDNEQ- 332
            G      LP T+            + F +   +L +  L+ ++PNL++LK+  +  +  
Sbjct: 271 IGDDP-GRLPLTY--IHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPF 327

Query: 333 --KVEANGVFQNAEWTGGMCANLQIVQITRISWLPNEMSFIELILSKASLLRTISVTHGD 390
             + E   +F+  ++      +L+ V+IT  S +  E+ FI  +L  + +L T++V+   
Sbjct: 328 PLEEEGFDLFER-DYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSL 386

Query: 391 KCLMSNEDALSELLKYKRASPQAQILF 417
               +  D + ELL+Y R SP+AQ+LF
Sbjct: 387 SDKDAKMDMVIELLRYPRVSPRAQLLF 413



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,187,142
Number of extensions: 376799
Number of successful extensions: 1055
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,255,305
Effective search space: 3714887250
Effective search space used: 3714887250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)