BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0439200 Os09g0439200|AK108738
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254 87 9e-18
AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250 74 8e-14
AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188 68 5e-12
AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270 67 6e-12
AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239 64 6e-11
AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275 63 1e-10
AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198 51 5e-07
AT1G30135.1 | chr1:10596516-10597095 FORWARD LENGTH=132 50 1e-06
>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
Length = 253
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 25/129 (19%)
Query: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDG---------VDKNTGTAATQSLPRPAHN 171
LTIFY G+V+VF +F + K K+++ + S G + N T A Q +P P
Sbjct: 127 LTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQ-VPHPRKT 185
Query: 172 S-----------LPDLPIARRNSLHRFLEKRKGRMNANAPYQANC---TAAPSKQANGDK 217
+ L +LPIARR SLHRFLEKRK R+ + APYQ C A+ + Q G+
Sbjct: 186 TTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQL-CDPAKASSNPQTTGNM 244
Query: 218 SWLGFGQEM 226
SWLG E+
Sbjct: 245 SWLGLAAEI 253
>AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250
Length = 249
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 55/246 (22%)
Query: 16 RSSFAVTCSLLSQFLKEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTMNLL-- 73
+ SF+ TC+ LS++LKEK T MNL
Sbjct: 15 KPSFSQTCTRLSRYLKEK-----------GSFGDLSLGMTCKPDVNGGSRQPTMMNLFPC 63
Query: 74 --SGLDAPA--VEVEPNTA---ETAADELPLIKAPADQQSDESASEAAGEKAQQ--LTIF 124
SG+D+ A +++P T +++ D Q + +++ ++Q LTIF
Sbjct: 64 EASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIF 123
Query: 125 YGGKVVVFENFPSTKVKDLL----------------------------QIVSTGDGVDKN 156
YGG+V+VF++F + K K+++ +I S+ + V
Sbjct: 124 YGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSP 183
Query: 157 TGTAATQSL-PRPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCTA-APSKQAN 214
TAA + + P PA + +LPIARR SLHRFLEKRK R+ + APYQ + +A A SK N
Sbjct: 184 AKTAAQEPIQPNPASLAC-ELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPTN 242
Query: 215 GDKSWL 220
+WL
Sbjct: 243 --PAWL 246
>AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188
Length = 187
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 25/107 (23%)
Query: 120 QLTIFYGGKVVVFENFPSTKVKDLLQIVS--------------TGDGVDKNTGTAATQSL 165
QLTIF+GG V VF+ PS KV+++L+I + + +++ ++T ++
Sbjct: 57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPALNRAPSFSSTSNV 116
Query: 166 PRPAHNSLP-----------DLPIARRNSLHRFLEKRKGRMNANAPY 201
PA P DLPIARR+SL RFLEKR+ R+ PY
Sbjct: 117 ASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPY 163
>AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270
Length = 269
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 22/107 (20%)
Query: 120 QLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDL--- 176
QLTIF+GGKV+VF FP K K+++++ + V ++ + + ++ +PDL
Sbjct: 106 QLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEP 165
Query: 177 -------------------PIARRNSLHRFLEKRKGRMNANAPYQAN 204
IARR SLHRF KRK R A APYQ N
Sbjct: 166 TSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVN 212
>AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239
Length = 238
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 120 QLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRP---------AH 170
QLTI +GG VF+ P+ KV+++L I + + T+ +L R A
Sbjct: 131 QLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKATETINLTSINPALKRAISFSNASTVAC 190
Query: 171 NSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCTAA 208
S D+PIARR SL RF EKR+ R PY A + A
Sbjct: 191 VSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEA 228
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 104 QQSDESASEAAGEKAQQLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGT--AA 161
++S A + + QLTI +GG VF P+ KV+++++I G TG A
Sbjct: 29 ERSIHEARSTEPDASTQLTIIFGGSCRVFNGVPAQKVQEIIRIAFAGKQTKNVTGINPAL 88
Query: 162 TQSLPRPAHNSLPDLPIARRNSLHRFLEKRKGR 194
++L + +++ DLPIARR SL RFLEKR+ R
Sbjct: 89 NRAL---SFSTVADLPIARRRSLQRFLEKRRDR 118
>AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275
Length = 274
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 26/117 (22%)
Query: 118 AQQLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGV----------DKNTGTAATQSLP- 166
+ QLTIF+GGKV+V+ FP K K+++++ V D+N ++ LP
Sbjct: 96 SSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPD 155
Query: 167 --RPAHNSLPDLP-------------IARRNSLHRFLEKRKGRMNANAPYQANCTAA 208
P N+ IARR SLHRF KRK R A APYQ N A
Sbjct: 156 LNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPYQVNQNAG 212
>AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198
Length = 197
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQS--LP---RP---AHNS 172
+TIFY G V VF+ K +++++ + + S LP RP N
Sbjct: 105 MTIFYNGSVSVFQ-VSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNL 163
Query: 173 LPDLPIARRNSLHRFLEKRKGRMNANAPY 201
DLPIARR SL RFLEKRK R+ + +PY
Sbjct: 164 EGDLPIARRKSLQRFLEKRKERLVSTSPY 192
>AT1G30135.1 | chr1:10596516-10597095 FORWARD LENGTH=132
Length = 131
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 105 QSDESASEAAGEKAQQLTIFYGGKVVVFENFPSTKVKDLLQIVS-------TGDGVDKNT 157
+S S + E++Q++TIFY GK+ + + + ++ I S + +G D
Sbjct: 30 ESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPN 89
Query: 158 GTAATQSLPRPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQA 203
+ + HN LP+ + + SL FL+KRK R+ A +PY +
Sbjct: 90 KSTSFH------HNQLPNPKASMKKSLQSFLQKRKIRIQATSPYHS 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,970,041
Number of extensions: 143842
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 9
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)