BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0439100 Os09g0439100|AK110960
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534 107 1e-24
AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535 100 2e-22
AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557 100 2e-22
AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536 96 4e-21
AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557 91 1e-19
AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538 88 7e-19
AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402 87 2e-18
AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553 87 2e-18
AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444 80 3e-16
AT3G28180.1 | chr3:10506110-10509067 FORWARD LENGTH=674 58 9e-10
AT4G31590.1 | chr4:15309889-15312336 REVERSE LENGTH=693 55 7e-09
AT2G24630.1 | chr2:10471558-10473984 REVERSE LENGTH=691 52 5e-08
AT3G07330.1 | chr3:2336121-2338942 REVERSE LENGTH=683 51 2e-07
>AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534
Length = 533
Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K A EI NK V++WKK+H++YSFF VR++VA I+TF+FY V++P +V+V
Sbjct: 329 WSCGPANLFRKMAFEIMTNKNVTLWKKVHVIYSFFVVRKLVAHIVTFIFYCVILPATVLV 388
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE+++P WG V IP+ IT++NA+ P SLHLM F
Sbjct: 389 PEVTVPKWGAVYIPSVITLLNAVGTPRSLHLMVF 422
>AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535
Length = 534
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 68/92 (73%), Gaps = 3/92 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI +NK V WKK++++YSFFFVR+++A +TF FY VV+PL+++V
Sbjct: 329 WSCGPANLFRKMVMEIVRNKKVRFWKKVYVIYSFFFVRKIIAHWVTFCFYCVVLPLTILV 388
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLM 92
PE+ +P+WG V IP+ ITI+N++ P S+HL+
Sbjct: 389 PEVKVPIWGSVYIPSIITILNSVGTPRSIHLL 420
>AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557
Length = 556
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 4 WYCQPL---QKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI +NK VS WKKL+L+Y+FFF+R++V I TF+FY +++P +V+
Sbjct: 352 WSCGPANLWRKMTMEILQNKKVSAWKKLYLIYNFFFIRKIVVHIFTFVFYCLILPTTVLF 411
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE+ +P W V PT ITI+NAI P SLHL+ F
Sbjct: 412 PELQVPKWATVYFPTTITILNAIATPRSLHLLVF 445
>AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536
Length = 535
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K A EI KN+ VS+WKK++L+Y+FFF+R++V I TF+FY V++P +V+
Sbjct: 327 WSCGPANLFKKIAMEIIKNQNVSLWKKVYLIYNFFFLRKIVVHIFTFVFYCVILPATVIF 386
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLM 92
PEI +P W + IP ITI+NAI P S +L+
Sbjct: 387 PEIEVPKWTTIYIPATITILNAIATPKSFYLI 418
>AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557
Length = 556
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 67/94 (71%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P L+K A +I +++ VS+WKK ++LYSFFF+R++VA ILTF FY V++P +V+
Sbjct: 351 WTCGPANLLRKMAGQIIRSENVSLWKKWYMLYSFFFMRKIVAHILTFCFYCVILPATVLF 410
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE+++P W +P+ IT++ AI S+HL+ F
Sbjct: 411 PEVTVPKWAAFYLPSLITLLIAIGRLRSIHLLAF 444
>AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538
Length = 537
Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P ++K EI NK V +WKK +++YSFFF+R++V T+ FY V++P SV +
Sbjct: 343 WSCGPANLIRKMTMEIIHNKRVKIWKKFYVIYSFFFLRKIVVHFFTYFFYCVILPTSVFL 402
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE++IP W + +P+ IT+++AI P S +L+ F
Sbjct: 403 PEVNIPNWSTIYVPSVITLLSAIATPRSFYLVIF 436
>AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402
Length = 401
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI NK VS+WKK +++YSFFFVR+V LTF FY +++P SV
Sbjct: 204 WSCGPANLFRKMTMEIIFNKRVSIWKKFYVIYSFFFVRKVAVHFLTFFFYCIIVPTSVFF 263
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PEI IP W + +P+ I+I + + P S +L+ F
Sbjct: 264 PEIHIPSWSTIYVPSLISIFHTLATPRSFYLVIF 297
>AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553
Length = 552
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI +NK V++WKKL+L+YSFFF+R+++ TF+FY V++P SV
Sbjct: 354 WSCGPANLFRKMIMEIIRNKRVTIWKKLYLVYSFFFLRKIIVHCFTFIFYCVILPTSVFF 413
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE++IP W IP+ IT+ I P S +L+ F
Sbjct: 414 PEVNIPAWSTFYIPSMITLCIVIATPRSFYLVIF 447
>AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444
Length = 443
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI +NK V++WKKL+++YSFFFVR+++ TF FY ++P SV
Sbjct: 245 WSCGPANLFRKMTMEIIRNKRVTIWKKLYVIYSFFFVRKIIVHFFTFFFYCFILPTSVFF 304
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE++IP W V P IT+ NAI P S +L+ F
Sbjct: 305 PEVNIPTWSTVYFPFMITLFNAIATPRSFYLVIF 338
>AT3G28180.1 | chr3:10506110-10509067 FORWARD LENGTH=674
Length = 673
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 4 WYCQPLQKNAT---EIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W+ P+Q I K+K +SVWKK +L++ FF +R+++ P +F + +++PL++ +
Sbjct: 431 WHSGPMQLFRLCLPSIIKSK-ISVWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFI 489
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSL 89
PE +P+W + +P I+++N + +P S
Sbjct: 490 PEAELPLWIICYVPIFISLLNILPSPKSF 518
>AT4G31590.1 | chr4:15309889-15312336 REVERSE LENGTH=693
Length = 692
Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 45/68 (66%)
Query: 22 VSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMVPEISIPVWGMVCIPTAITIMN 81
+++WKK +L+ FF +R+++ P +F + +++PL++ VPE +PVW + IP ++ +N
Sbjct: 479 IAIWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYIPVFMSFLN 538
Query: 82 AIRNPGSL 89
+ +P S
Sbjct: 539 LLPSPKSF 546
>AT2G24630.1 | chr2:10471558-10473984 REVERSE LENGTH=691
Length = 690
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 45/68 (66%)
Query: 22 VSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMVPEISIPVWGMVCIPTAITIMN 81
+++WKK +L+ FF +R+++ P +F + V++P+++ VPE +P+W + +P ++++N
Sbjct: 479 IAMWKKANLILLFFLLRKLILPFYSFTLFCVILPITMFVPEAELPIWVICYVPIFMSLLN 538
Query: 82 AIRNPGSL 89
+ P S
Sbjct: 539 ILPAPKSF 546
>AT3G07330.1 | chr3:2336121-2338942 REVERSE LENGTH=683
Length = 682
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 4 WYCQPLQKNAT---EIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W+ P+Q +I ++K VS KK ++++ FF +R+++ P +F + V++PL++
Sbjct: 453 WHSGPMQLFRLCFFDILRSK-VSAAKKANMIFLFFLLRKLILPFYSFTLFCVILPLTMFF 511
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSL 89
PE ++P W + IP ++I+N I P S
Sbjct: 512 PEANLPSWVVCYIPGIMSILNIIPAPRSF 540
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.143 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,004,766
Number of extensions: 66007
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 14
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 105 (45.1 bits)