BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0437500 Os09g0437500|AK099618
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56220.3  | chr1:21043414-21044469 FORWARD LENGTH=141           57   3e-09
AT1G54070.1  | chr1:20182683-20183242 FORWARD LENGTH=124           49   1e-06

>AT1G56220.3 | chr1:21043414-21044469 FORWARD LENGTH=141
          Length = 140

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKYXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXX 57
          MGLLD LWDDTVAGPRP++GLGKLRK+                                 
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 58 VTRSITILRPP 68
          VTRSI I++PP
Sbjct: 61 VTRSIMIIKPP 71



>AT1G54070.1 | chr1:20182683-20183242 FORWARD LENGTH=124
          Length = 123

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query: 1  MGLLDQLWDDTVAGPRPDSGLGKLRKY 27
          MG L +LWD+TVAGP PD+GLGKLRK+
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKH 27



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,209,270
Number of extensions: 54442
Number of successful extensions: 89
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)