BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0437100 Os09g0437100|Os09g0437100
(165 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20820.1 | chr5:7046911-7047294 REVERSE LENGTH=128 82 1e-16
AT1G17345.1 | chr1:5940525-5940920 FORWARD LENGTH=132 79 9e-16
AT1G72430.1 | chr1:27265150-27265509 REVERSE LENGTH=120 74 4e-14
AT3G12955.1 | chr3:4135659-4136078 REVERSE LENGTH=140 50 5e-07
>AT5G20820.1 | chr5:7046911-7047294 REVERSE LENGTH=128
Length = 127
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 86 LHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXXXXXXXXXXXXXXXCEVVLFEHLLWM 145
L VYVG++RR Y +++D+V HP+FQ L + CEVVLFEHLLWM
Sbjct: 48 LQTVYVGRTRRTYHVSSDVVSHPLFQQL---AAVDGGCGSEDGSISVSCEVVLFEHLLWM 104
Query: 146 LENADP---QPESLDELVEYYAC 165
LENAD +PES+ ELVE+YAC
Sbjct: 105 LENADADESRPESVYELVEFYAC 127
>AT1G17345.1 | chr1:5940525-5940920 FORWARD LENGTH=132
Length = 131
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 86 LHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXXXXXXXXXXXXXXXCEVVLFEHLLWM 145
LH VYVGKSRR Y++++ ++ HP+FQ L+DRS CEVVLFEHLLWM
Sbjct: 44 LHVVYVGKSRRPYMLSSHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWM 103
Query: 146 LENA--------DPQPESLDELVEYYA 164
L+N+ D + S++EL E+Y
Sbjct: 104 LKNSSSDHGDEDDRERGSVEELAEFYT 130
>AT1G72430.1 | chr1:27265150-27265509 REVERSE LENGTH=120
Length = 119
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 85 GLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXXXXXXXXXXXXXXXCEVVLFEHLLW 144
LH VYVG++RR Y++ D++ HP+FQ LVDRS CEVVLFEHLLW
Sbjct: 42 NLHVVYVGQTRRPYMLRPDIISHPLFQELVDRS--SSRSIEQDREIVVACEVVLFEHLLW 99
Query: 145 MLENADPQPESLDELVEYYA 164
ML++ + S++EL E+Y
Sbjct: 100 MLKSGQ-EGGSVEELAEFYT 118
>AT3G12955.1 | chr3:4135659-4136078 REVERSE LENGTH=140
Length = 139
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 82 VPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXXXXXXXXXXX--XXXXCEVVLF 139
P V VG++++ YLI+ + HP+ LV++ CEVVLF
Sbjct: 51 TPSMYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLF 110
Query: 140 EHLLWMLENADPQP--ESLDELVEYY 163
+HLLWMLE D ESLD+ Y
Sbjct: 111 DHLLWMLEYGDEVHILESLDDFAHLY 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,366,912
Number of extensions: 53528
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 5
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)