BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0436700 Os09g0436700|AK070597
         (489 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27660.1  | chr5:9789835-9792235 REVERSE LENGTH=429             77   1e-14

>AT5G27660.1 | chr5:9789835-9792235 REVERSE LENGTH=429
          Length = 428

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 35/255 (13%)

Query: 164 SGTIIEFLNGICSVVTSASLIRCMDKDEQADELKINVWLPSGEKCEGFISNVDLYYNICL 223
           SGTII+  +G  +++T A ++        + + +++V L  G   EG + N DL  +I L
Sbjct: 150 SGTIID-ADG--TILTCAHVVVDFQNIRHSSKGRVDVTLQDGRTFEGVVVNADLQSDIAL 206

Query: 224 VTVHCTSNLPKKSFNDDTGFFDLYGNHSKDVVALGRSCEPWSLK--VASGKL-------- 273
           V +   + LP          F         V+A+G  C P SL+  V +G +        
Sbjct: 207 VKIKSKTPLPTAKLG-----FSSKLRPGDWVIAVG--C-PLSLQNTVTAGIVSCVDRKSS 258

Query: 274 ---IPRRHRFDCEELLVSSCKITKIGVGGPLMDFNGNIVGMNFYDKKETPFL----PSFI 326
              +  +HR    E L + C I     GGPL++ +G ++G+N         L    P   
Sbjct: 259 DLGLGGKHR----EYLQTDCSINAGNSGGPLVNLDGEVIGVNIMKVLAADGLGFSVPIDS 314

Query: 327 VLKCLQHFKEFGKVVRPLHGLRVGNLHKESLASLEKICHEFPKV-CGVIVEKVEPS--AE 383
           V K ++HFK+ G+V+RP  GL++  L+   +A L++    FP V  GV+V  V P   A+
Sbjct: 315 VSKIIEHFKKSGRVIRPWIGLKMVELNNLIVAQLKERDPMFPDVERGVLVPTVIPGSPAD 374

Query: 384 HSEIKVGDIITHLDG 398
            +  K GD++   DG
Sbjct: 375 RAGFKPGDVVVRFDG 389



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,897,374
Number of extensions: 477360
Number of successful extensions: 1027
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,282,721
Effective search space: 3197130306
Effective search space used: 3197130306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)