BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0433000 Os09g0433000|AK069858
         (313 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57500.1  | chr5:23286406-23287525 REVERSE LENGTH=319          174   6e-44

>AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319
          Length = 318

 Score =  174 bits (441), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 140/254 (55%), Gaps = 21/254 (8%)

Query: 74  LSLLVGVLTMPKRYERRDIVXXXXXXXXXXXXXXXXXXXXXXXXXXPVDAQLVALEAARH 133
           + +L+G+LT+P +Y RR  +                               LVALE  R+
Sbjct: 69  IRILIGILTLPDQYSRRHFLRMIYGTQNVPDGVKVDVKFVFCNLTKEDQKVLVALEIMRY 128

Query: 134 GDVVVLGGCEENMNHGKTHAYLSSVPRLFASS-----PYDYVMKTDDDTYLRVAALADEL 188
            D+++L  C ENMN GKT+ Y SS+P +F  +     PY YVMK DDDTY+R+ +L   L
Sbjct: 129 DDIIILN-CNENMNKGKTYTYFSSLPDIFNETDAQKPPYHYVMKADDDTYIRLESLVASL 187

Query: 189 RGKPRDDVYLGYGYAMGGQPM-PFMH---GMGYVVSWDVATWVSTAEEILARNDTEGPED 244
           R  PR+D+Y  YGY +    M PF+H   GMGY+VSWD+A W+  +E  + +   EGPED
Sbjct: 188 RPLPREDLY--YGYVIPCPSMDPFVHYMSGMGYLVSWDIAVWLKDSE--IPKKHLEGPED 243

Query: 245 LMVGKWLNLAGRGRNRYDLKPRMYDL----SWDMDNFRPDTVAVHMLKDNRRWAAAFSYF 300
            + G W+    RG+NR++ K  MY+     +       PDT+AVH+LK+  +W    +YF
Sbjct: 244 KVFGDWIREGRRGKNRFNAKWSMYNFPEPPTRCTHELWPDTIAVHLLKNQEKWIRTLNYF 303

Query: 301 NVTAGI---NLHHL 311
           NVT+ +    L+H+
Sbjct: 304 NVTSNLKPSKLYHI 317



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,764,426
Number of extensions: 227735
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)