BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0416600 Os09g0416600|AK101668
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390 73 2e-13
AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355 68 5e-12
AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290 52 3e-07
AT4G12690.1 | chr4:7480896-7481753 FORWARD LENGTH=286 52 3e-07
AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290 50 8e-07
AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290 50 8e-07
>AT5G11000.1 | chr5:3479166-3480335 REVERSE LENGTH=390
Length = 389
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 24/107 (22%)
Query: 18 GKEREISVDLVSRGHGXXXXXXXXXXXXXADVGMSVTVDGERVLHIRRLRWKFRGTEKVD 77
GK REIS+D D + +VD ++VL I+RLRWKFRG EKV+
Sbjct: 192 GKNREISIDC----------------RVDEDAKLCFSVDSKQVLQIKRLRWKFRGNEKVE 235
Query: 78 LGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFIFRFE 124
+ G VQ+SWD+++WLF ++ S+ HAVF+FRFE
Sbjct: 236 IDGVH-VQISWDVYNWLFQSK-------SSGDGGGGGGHAVFMFRFE 274
>AT2G25200.1 | chr2:10736580-10737644 REVERSE LENGTH=355
Length = 354
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 25/126 (19%)
Query: 7 GRGHKTFVNVRGKEREISVDLVSRGHGXXXXXXXXXXXXXADVGMSVTVDGERVLHIRRL 66
R + T + ++GK REIS+D+ D + +VD + VL I +L
Sbjct: 185 NRVYSTKIMIQGKLREISIDV---------------KVVNDDASLRFSVDDKSVLKISQL 229
Query: 67 RWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFIFRFELA 126
+WKFRG K+ + G +Q+SWD+ +WLF +D P AVF+ RFE
Sbjct: 230 QWKFRGNTKIVIDGV-TIQISWDVFNWLFGGKDKV---------KPDKIPAVFLLRFENQ 279
Query: 127 DIAGDD 132
++ G+D
Sbjct: 280 EVEGND 285
>AT5G28150.1 | chr5:10135826-10136695 FORWARD LENGTH=290
Length = 289
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 47 ADVGMSVTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADAS 106
D + V VDG+ +L ++RL+WKFRG + + + V+V WD+H WLF
Sbjct: 192 TDPCLVVRVDGKTLLQVKRLKWKFRGNDTIVVNKMT-VEVLWDVHSWLF----------- 239
Query: 107 AVTPPPQPAHAVFIFR 122
P +AVF+FR
Sbjct: 240 ---GLPTTGNAVFMFR 252
>AT4G12690.1 | chr4:7480896-7481753 FORWARD LENGTH=286
Length = 285
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 51 MSVTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTP 110
M ++VDG ++ +R L+WKFRG + V L + VQV WD++ WLF
Sbjct: 193 MWISVDGIVLVQVRNLQWKFRGNQTV-LVDKEPVQVFWDVYDWLFST------------- 238
Query: 111 PPQPAHAVFIFRFELADIAGDDRDSAEVKD 140
P H +FIF+ E +G+ S E K+
Sbjct: 239 -PGTGHGLFIFKPE----SGESETSNETKN 263
>AT3G04860.1 | chr3:1339349-1340218 REVERSE LENGTH=290
Length = 289
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 47 ADVGMSVTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADAS 106
+D + V VDG+ ++ ++RL WKFRG + + + V+V WD+H W F
Sbjct: 193 SDPCLIVRVDGKILMQVQRLHWKFRGNDTI-IVNRISVEVLWDVHSWFFG---------- 241
Query: 107 AVTPPPQPAHAVFIFR 122
P P +AVF+FR
Sbjct: 242 ---LPSSPGNAVFMFR 254
>AT3G13229.1 | chr3:4268566-4269435 REVERSE LENGTH=290
Length = 289
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 47 ADVGMSVTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLF 95
+D M +TVDG + I L W+FRG E V + G +++ WD+H WLF
Sbjct: 176 SDPEMWITVDGVPAIRIMNLNWRFRGNEVVTVSDGVSLEIFWDVHDWLF 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,413,065
Number of extensions: 149215
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 7
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)