BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0410700 Os09g0410700|011-019-E11
(251 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369 80 1e-15
AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254 69 3e-12
AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345 67 8e-12
>AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369
Length = 368
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 29/127 (22%)
Query: 25 QTDKASLLAEVIEHVKELKRQTTXXXXXXXXGDYHGNXXXXXXAVVGRRSAAAQQLLPTX 84
+TDKASLLAEVI+HVKELKR+T+ + L+PT
Sbjct: 205 KTDKASLLAEVIQHVKELKRETSVI--------------------------SETNLVPTE 238
Query: 85 XXXXXXXXXXXXX---GKLVVRASLCCEDRPDLIPDIXXXXXXXXXXXXXXEITTLGGRV 141
G+ V++ASLCCEDR DL+PD+ EITT+GGRV
Sbjct: 239 SDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRV 298
Query: 142 RSVLLIT 148
++VL +T
Sbjct: 299 KNVLFVT 305
>AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254
Length = 253
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 25 QTDKASLLAEVIEHVKELKRQTTXXXXXXXXGDYHGNXXXXXXAVVGRRSAAAQQLLP-- 82
+TDKA+LLA+V++ V+ELK+QT S + Q LLP
Sbjct: 98 KTDKATLLAKVVQRVRELKQQTL------------------------ETSDSDQTLLPSE 133
Query: 83 TXXXXXXXXXXXXXXGKLVVRASLCCEDRPDLIPDIXXXXXXXXXXXXXXEITTLGGRVR 142
T G ++ +ASLCCEDR DL+PD+ E+ T+GGR R
Sbjct: 134 TDEISVLHFGDYSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTR 193
Query: 143 SVLLITA 149
SVL++ A
Sbjct: 194 SVLVVAA 200
>AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345
Length = 344
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 27/125 (21%)
Query: 25 QTDKASLLAEVIEHVKELKRQTTXXXXXXXXGDYHGNXXXXXXAVVGRRSAAAQQLLPTX 84
+TDKASLLAEVI+H+KELKRQT+ +PT
Sbjct: 163 KTDKASLLAEVIQHMKELKRQTSQITDTYQ--------------------------VPTE 196
Query: 85 -XXXXXXXXXXXXXGKLVVRASLCCEDRPDLIPDIXXXXXXXXXXXXXXEITTLGGRVRS 143
G LV+RAS CC+DR DL+ D+ EI T+GGRV++
Sbjct: 197 CDDLTVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKN 256
Query: 144 VLLIT 148
+L ++
Sbjct: 257 ILFLS 261
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,425,546
Number of extensions: 42385
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)